Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3058 ATGGCGGCAAAATTGATGGAATTCTTTTATCAAGAACTAGCCAAGGCTACAAATAACTTCAGCTCTGATAACAAAATTGGTCAGGGTAGATTTGGAGCTGTCTATTTTGCAAAATTGAGATGCCAAAAAGCAGCAATTAAGAATATGGATGTTCAAGCATCAACAGAGTTTCTTTCAGAGTTGATGGTCTTAAAACATGATCATCACTTGAATTTGGTGCATTTGATTGGATATTGCATCGAGGGATCTCTTTTCTTGTGGAGTGAACCTTTGGCATGGTCAACAAGGGTGCAAATTGCTCTGGATTCAGCAAGAGGACTTGAATATATACATGAACACACTGTTCCTGTTTATATCCACCGTGATGTGAAACCTGCTAACATATTAATATATAAAGACTTTTGTGAAAAGGTTTTGGAAATTCACCAAGTTACAAATTTTGGGCTAACTAAACTTAGGGAAGTTGGAAGCTCTTTATCACTTCATACTCGTCTTGTGGGAACATTTAGATACATGCCTCCAGTCGGATCAGAATGCTTCAATCAGCTAAAGGTTTTTACGGCCGCAGCACCTATAATACTTCTGGCAATCAAATCAGAAGAAAACAAGCTACAAGAAGTCATGGTTGGATTAGCAGCAAATGTTTTCACATTCATGTCCTCTCAGGAATCAAGCTATGTATTTCAAGAAGCTAAAATCACTGAAGTTGAACTGGCAAGTATACTAGTACATATTCTCAAGAAGCACAAGTATCCGGCAACAAAGGTGCTGAGGATAAGGAGGTTTGCCATAAAGTTTGAGATTTGGATGATGAAAGACAAAGTAAAAAACATATATACCTTCAAGCATATGGGAATGGAGAAGGTGCTGGAAGGTGTATTAGAAACCACATCAGAGCTTGAAAGCTTCAATGTTTTCTCTAGTACTGTTGGATTTAACAGGCACAATCTAACAATTCACTCACTGGAATCCTACACGGAGAGACTAGAGGCTGCGACTCAGCAGTCTCAACAAGGTTGGAAAGACGTCATCGATGGCTTTGCAGCTGCAGCCGTCAATCCCGATACGGAGATCTTCAACTGCATGACATCTATGGATGAACTCAAGCTAGAGTGGAGGGAGTCCCTAGAGTGGAGGGAGTCGTTGGAGGGAGTGCAACATATGGAGTCTCAGATGGAAGTGTACCAGGCCAAGTTGCGCACCATTAGCATCGACCTTGCTGGTGGCAGTGAACCTACTGGTGGCATACGGACATCACCGCCTTCTGCGCTGGCGACTCAGGGCCAATGA 1290 0.4186 MAAKLMEFFYQELAKATNNFSSDNKIGQGRFGAVYFAKLRCQKAAIKNMDVQASTEFLSELMVLKHDHHLNLVHLIGYCIEGSLFLWSEPLAWSTRVQIALDSARGLEYIHEHTVPVYIHRDVKPANILIYKDFCEKVLEIHQVTNFGLTKLREVGSSLSLHTRLVGTFRYMPPVGSECFNQLKVFTAAAPIILLAIKSEENKLQEVMVGLAANVFTFMSSQESSYVFQEAKITEVELASILVHILKKHKYPATKVLRIRRFAIKFEIWMMKDKVKNIYTFKHMGMEKVLEGVLETTSELESFNVFSSTVGFNRHNLTIHSLESYTERLEAATQQSQQGWKDVIDGFAAAAVNPDTEIFNCMTSMDELKLEWRESLEWRESLEGVQHMESQMEVYQAKLRTISIDLAGGSEPTGGIRTSPPSALATQGQ* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3058 429 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Amo18g3058 429 MobiDBLite consensus disorder prediction 409 429 - -
Amo18g3058 429 MobiDBLite consensus disorder prediction 415 429 - -
Amo18g3058 429 Pfam Protein kinase domain 21 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g3058 429 SMART serkin_6 20 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g3058 429 ProSitePatterns Protein kinases ATP-binding region signature. 26 47 IPR017441 GO:0005524
Amo18g3058 429 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 261 - -
Amo18g3058 429 SUPERFAMILY Protein kinase-like (PK-like) 6 174 IPR011009 -
Amo18g3058 429 ProSiteProfiles Protein kinase domain profile. 20 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g3058 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 118 130 IPR008271 GO:0004672|GO:0006468
Amo18g3058 429 Gene3D Transferase(Phosphotransferase) domain 1 85 206 - -
Amo18g3058 429 PANTHER - 2 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3058 Amo-Chr18 129247798 129250811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3058 4 174 Receptor kinase-like Gene Family AT3G21630 58.511 3.55e-61 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo18g3058 Pkinase 4.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3058 - - ahf:112770378 601.668