Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3054 ATGAGAAGACTGAATAATCAGAATGAAGATGAAGTTCTTGCCAATGATCAGACAGGGTTACAGTTGAATGATGAGAGTAAGGGAGGACATGCTGGTGTTGTTCTGAAGAAAGGGCCGTGGACAACTTCTGAAGATGCTATGTTGGTCGATTATGTTAATAAGCATGGAGAGGGAAACTGGAATGCTGTTCAGAAGTACTCAGGTCTATTACGTTGTGGAAAAAGTTGTCGATTGCGTTGGGCTAATCATCTGAGACCAAATTTAAAGAAAGGAGCATTTACCGCAGAAGAGGAGAGGTTGATTGCTGAACTTCACGCTAAAATGGGAAACAAATGGGCACGCATGGCTGCACATTTGCCTGGTCGCACAGATAATGAAATAAAGAACTACTGGAACACCCGTATCAAGAGGCGTCAACGTGCTGGCTTGCCACTTTATCCTCCTGAACTGTGCGTGCAAGCAGTGCAAGAGAATCAACATGGCCGAAGCTCTGGTGGTATTGATGGTGGCAATAATATGCATCATGATTTTGTTCACAAAAATTATGAGATACACAGTGCAATATTTGACAGTTGGAATGGTAGTCAGGGAATCCTACCATATCCGCCTGAGCTTCCTGATATTTCTGCTTACACCGGTATGCTGAAAGGTTTTGACTCTTCCAAGTATTGTAAGTTTGAACAAATAACATCACCAAACCACAAGCGTCTCCGTGAGTCAACAACACCTTTTATTGGATCTGGTGGTATGAACACAAATTGGTTTTATCCATTTGATCAAATTCAGGATAACACGCCTGACAAGATTGCACAATCATTTGGCATGCAATCTCCCTTTGATCTCGGACCCTCTCCACACAGCTCCATTTGTTACAGTCATTCACTTTCGAATGGCAATTCCTCTACTTCTAAGCCGGCTTATGAGGCTGTGAAGTTTGAGCTCCCTTCACTCCAATATCCAGAAACTGATGTAGGTAGCTGGAGTACATCTCCACCACCTCCTTTACTTGAGTCAGTTGATGATTTCATTCAATCTCCTTTGCCAGTTAGTGCACTGGAGTCCGATTGTTCTTCCCCACAAAATAGTGGCCTGCTGGATGCTTTACTTTATCAGGCTAGGACTCTGAGCAATTCAAAGAACCATTATTCTGACAAGAGTTCAAATTCATCTACCGCAACTCCTTGTGACAGAGCGCTCAGCTCCACTCTGAACAAGTATGAGACAGACTGGGAAGACTACACTGACACTATATCACCATTCGGTGCAACTTCAATATTGAATGAGTGCACTGTTGCTAGTGCCAGTGCAAATTCATTGGATGAACACCCAACAGTTCGTTCCTTTAATGACAACATTGTGAAAACAGAGAATGTTGATCAGGTTTGGTCCCCGAACAGTGAAAATCAAGGCATGTCTGCGATCAAAATTACCCGGCCAGATGTTTTGCTTGCTTCGGATTGGCTTCAGCAGGGTTCGGGGCACGACATGAGGCAAGGCAGCATGGCTGATGATATACCTGCCCTTCGCGAAGATGATTTAGCCACTGACTCCAAGCATACAAGCTCTGGAACTTCTCTGTTGAGTCAGGTATGTGGGTTTGGTTCTTGCGCAAGGAGCGTCATGCCTGCTTTCTGTCAAGGTTCTGATCGTGGTTAA 1656 0.442 MRRLNNQNEDEVLANDQTGLQLNDESKGGHAGVVLKKGPWTTSEDAMLVDYVNKHGEGNWNAVQKYSGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPELCVQAVQENQHGRSSGGIDGGNNMHHDFVHKNYEIHSAIFDSWNGSQGILPYPPELPDISAYTGMLKGFDSSKYCKFEQITSPNHKRLRESTTPFIGSGGMNTNWFYPFDQIQDNTPDKIAQSFGMQSPFDLGPSPHSSICYSHSLSNGNSSTSKPAYEAVKFELPSLQYPETDVGSWSTSPPPPLLESVDDFIQSPLPVSALESDCSSPQNSGLLDALLYQARTLSNSKNHYSDKSSNSSTATPCDRALSSTLNKYETDWEDYTDTISPFGATSILNECTVASASANSLDEHPTVRSFNDNIVKTENVDQVWSPNSENQGMSAIKITRPDVLLASDWLQQGSGHDMRQGSMADDIPALREDDLATDSKHTSSGTSLLSQVCGFGSCARSVMPAFCQGSDRG* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3054 551 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Amo18g3054 551 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Amo18g3054 551 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 547 - -
Amo18g3054 551 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Amo18g3054 551 Gene3D - 36 89 - -
Amo18g3054 551 CDD SANT 39 84 IPR001005 -
Amo18g3054 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Amo18g3054 551 SMART sant 36 86 IPR001005 -
Amo18g3054 551 SMART sant 89 137 IPR001005 -
Amo18g3054 551 CDD SANT 92 133 IPR001005 -
Amo18g3054 551 Gene3D - 92 138 - -
Amo18g3054 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Amo18g3054 551 MobiDBLite consensus disorder prediction 1 36 - -
Amo18g3054 551 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Amo18g3054 551 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 547 - -
Amo18g3054 551 ProSiteProfiles Myb-like domain profile. 35 84 IPR001005 -
Amo18g3054 551 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3054 Amo-Chr18 129043338 129048248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3054 29 549 MYB Transcription Factor Family AT5G06100 43.609 6.00e-125 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo18g3054 Myb_DNA-binding 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3054 K09422 - gmx:100810415 751.125