Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3049 ATGGAAGAAGGGTTATGTCAAAACTCATCAGATTCTGTTTATAAGTTAGGGATTGTAGATGTTAAACCCTTGCGTAGTTTGGCACCAGTGTTCCCGGAATCTACGCTAGGTTCTACATCTGCCCAGCCCCCATATGGATTTTCTCCATTTTTGCCCGTGGGTGTAAATCAAGAATTTCGAGCACCCCCTGCTCCCGCGCCAGCTCCGGTTCCGGCTCCAGCTCCGGTTCCAGCTCCTGCGCCAGTAAGGTCATTTAGGAGTTCAGTAGTTGAAGAAGAAGCCCCACGTGGAGCTGATGGTGATGGTTCTTCATCAATGGAGGGGCTTAGTGGTGCTGCTAATGACCGAAACCATGCAGCACCAGATATGTGTGGAAGCAAACCACCTCCTGGTTCTATTCCAGCTCCGGTTCCATTAAGGTCCTTTAGGAGCCCTCTGGTTGAAGAAGAAACCCTGCACGGAGGAAATGGTGATGGTTCTTCGTCCGTGGATGGGCTCAATGGTGTTGTTAATGACCAAAATTGTACGGCACCACATATGCGTGGTTGCAAGTCATCTAACACATCCATACCGGCTCCAACTCCATTACGGGTCTATAGGAGCCCCCTAGTTGAAGAAGTAAACCTACGTGGACCTAATGTGGATGCTGGTTCATCATTTGAAGGGTTCAATGGTGTTGCTAATGCCCAAAAGCGTTCAGAACCAAATTCACAAGGCAACAAATCATCCCAAAAGAGGAGCAGGGTAAATCAAGATTCAGATTTTGTATTGTCTTCGTCGATCAGTCTTAGTCTAGAAAAAAGGAGTGACGCTGACCGTGAGACAGTTAATTTTGTACTCACGACATTTGATGCTCTTCGAAGAAGGCTATTGCAACTTGAAGAAGCCAAGGAATTGAACACGACTGGTGTTATCAAGCGTGCAGATTTAAGAGCTAGCAATACTATGACACTCAGAGGGGTTCGAACGAACCTGAGAAGGAGAATAGGAGTAGTGCCTGGGATTGAGATTGGTGACATTTTCTACCTACGAATGGAGTTATGTCTCGTGGGCTTACATGGACAGACAATGAGCGGAATTGACTATGCGACTATGAAATGTGAATCTCAGGAGGAACCTTTGGCTCTAAGCATTGTTTCGTCTGGAGAATATGATGATGATACAGAGGATAATGATATTTTGGTATATAGTGGTCAGGGTGACTTCCACAAGAAAGATAAGAATGCGACTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTGGATAAAAGTTCACAACGGCATAATGAAGTAAGAGTCATCCGTGGACTGAAAGATGCTACTAACAAAAGCACAAAAATATATGTTTATGATGGTTTGTATAAAATCCAAGATTCTTGGATAGAAAGGGGGAAATCTGGTGGTGGCATTTTTAAGTATAAGTTTGTAAGATTGCCTGAACAGCCCAGTGCTTTTGCTGTTTGGAAATCAGTTCAGAAATGGAAAGAAGGCACCCTTTCAAGGAGTGGTCTTATTATTAAAGATCTCTCTTCAGGAATCGAGAGTATTCCTGTATCACTTGTCAATGAGGTTGATAATGCAAAGGGTCCTGGTTTCTTCACTTACGTTCATTCTCTCAAAAACCCAAAACCATTTGGTTCAATTATGTCTTCTCATGGATGCAATTGTAACAAAGCATGTGTCCCGGGAGATTTGAGTTGCTCTTGCATTCAAAGAAATGTTGGTGATTTTCCATATATTGCAAATGGTTTTCTAGTAAGTCGGAAGCCATTAGTTCATGAATGTGGCTCTATGTGTCGTTGTCTTCCGAATTGCAAAAATCGAGTGTCCCAGTCTGGTTTAAAGCATTACATGGAAGTGTTCAAAACGATGGATCGAGGGTGGGGTCTTCGATCATTGGATCCTATTCGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTTGTTGACAGAGCCAAGTTAAGTGTGGAAGGAGATAATGAGTACATTTTTGATACAAGCCGTATTTTTAAACCTTTCAAGTGGAACTATGAACCTAGCTTACTGGAAGACGGGGCTTCAAGTGATGGCAATGAAGATTATGATATACAATCCCATCTAATTATAAGCGCCAAAGATGTTGGGAACGTGGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCAGTTGTATATCATGAAAACAATCAATCCTTCCTTCACATTGCATTTTTTGCCCTAAGACACATTCCTCCGATGACAGAGTTAACATATGATTATGGAGTTACCCGCTCTGGTCATGCTGAGGGTAGCAGTTCATCCAAGGGAAGGAAGAAATGCTTTTGTGGATCCCCAAAATGCTATGGTTCTTTTGGTTGA 2373 0.4294 MEEGLCQNSSDSVYKLGIVDVKPLRSLAPVFPESTLGSTSAQPPYGFSPFLPVGVNQEFRAPPAPAPAPVPAPAPVPAPAPVRSFRSSVVEEEAPRGADGDGSSSMEGLSGAANDRNHAAPDMCGSKPPPGSIPAPVPLRSFRSPLVEEETLHGGNGDGSSSVDGLNGVVNDQNCTAPHMRGCKSSNTSIPAPTPLRVYRSPLVEEVNLRGPNVDAGSSFEGFNGVANAQKRSEPNSQGNKSSQKRSRVNQDSDFVLSSSISLSLEKRSDADRETVNFVLTTFDALRRRLLQLEEAKELNTTGVIKRADLRASNTMTLRGVRTNLRRRIGVVPGIEIGDIFYLRMELCLVGLHGQTMSGIDYATMKCESQEEPLALSIVSSGEYDDDTEDNDILVYSGQGDFHKKDKNATDQKLQRGNLALDKSSQRHNEVRVIRGLKDATNKSTKIYVYDGLYKIQDSWIERGKSGGGIFKYKFVRLPEQPSAFAVWKSVQKWKEGTLSRSGLIIKDLSSGIESIPVSLVNEVDNAKGPGFFTYVHSLKNPKPFGSIMSSHGCNCNKACVPGDLSCSCIQRNVGDFPYIANGFLVSRKPLVHECGSMCRCLPNCKNRVSQSGLKHYMEVFKTMDRGWGLRSLDPIRAGTFICEYAGEVVDRAKLSVEGDNEYIFDTSRIFKPFKWNYEPSLLEDGASSDGNEDYDIQSHLIISAKDVGNVARFMNHSCSPNVFWQPVVYHENNQSFLHIAFFALRHIPPMTELTYDYGVTRSGHAEGSSSSKGRKKCFCGSPKCYGSFG* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3049 790 ProSiteProfiles SET domain profile. 616 759 IPR001214 GO:0005515
Amo18g3049 790 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 142 790 IPR025794 GO:0016571
Amo18g3049 790 MobiDBLite consensus disorder prediction 230 251 - -
Amo18g3049 790 ProSiteProfiles Post-SET domain profile. 774 790 IPR003616 -
Amo18g3049 790 ProSiteProfiles YDG domain profile. 330 477 IPR003105 -
Amo18g3049 790 ProSiteProfiles Pre-SET domain profile. 552 613 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo18g3049 790 SUPERFAMILY PUA domain-like 312 499 IPR015947 -
Amo18g3049 790 SMART preset_2 506 600 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo18g3049 790 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 15 788 - -
Amo18g3049 790 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 15 788 - -
Amo18g3049 790 Gene3D SET domain 499 789 IPR046341 -
Amo18g3049 790 SUPERFAMILY SET domain 492 765 IPR046341 -
Amo18g3049 790 MobiDBLite consensus disorder prediction 85 135 - -
Amo18g3049 790 SMART G9a_1 325 481 IPR003105 -
Amo18g3049 790 Pfam Pre-SET motif 510 608 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo18g3049 790 Gene3D - 312 498 IPR036987 -
Amo18g3049 790 Pfam SET domain 627 759 IPR001214 GO:0005515
Amo18g3049 790 Pfam SAD/SRA domain 329 481 IPR003105 -
Amo18g3049 790 SMART set_7 616 765 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3049 Amo-Chr18 128843680 128847449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3049 194 790 Su(var)3-9 homologs AT5G04940 53.344 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo18g3049 SAD_SRA 7.8e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3049 K24405 - gmx:100800651 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g3049 18 128843680 128847449 Amo18g3049 18 128843680 128847449 ECH