Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3001 TTCTTGAAATTGTATAATAAGGACATCATCCACTTGATTGGCCTCGACGATGTAGCTTTTCGATTAGGTGTTGAGAGGCGGCAGATCTATGATATAGTGAACGTCTTAGAGAGTGTCGGGGTGCTTTTTAGAAAAGCTAAGAATCAGTATACTTGGAAAGAGTTTGCTGCTATTCCACCTTCAACCTGGTTAATAATGGCTTCTACAAGTAGAAGATCTACAAGTGGTTCCTATGGCAGCGGCAATGTAACGGGTGAACGTTTTTGTGAGTGTGGTTTAAGAGTTCCGTTACAAGTCTCAAATAGCATTACCAACCCGGGTAGAAAGTATTATGCCTGTCTTGTAAGACGATGTGGATGGTTTAGATGGGCAGGTCCAAGTATCCAACATGCTGAAGTTGCAGATGATCGCTCTTGTCATTTGAATTCCAATTTGAAGTCAATCGACCGAGTTGAAAATCTGCATAATGATGTTGTATTTCTGAAAATTTTAGCGGTCTTTCAGCTTTTGTATTTGTAG 519 0.4027 FLKLYNKDIIHLIGLDDVAFRLGVERRQIYDIVNVLESVGVLFRKAKNQYTWKEFAAIPPSTWLIMASTSRRSTSGSYGSGNVTGERFCECGLRVPLQVSNSITNPGRKYYACLVRRCGWFRWAGPSIQHAEVADDRSCHLNSNLKSIDRVENLHNDVVFLKILAVFQLLYL* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3001 172 SUPERFAMILY "Winged helix" DNA-binding domain 1 52 IPR036390 -
Amo18g3001 172 Gene3D - 1 56 IPR036388 -
Amo18g3001 172 PANTHER TRANSCRIPTION FACTOR E2F 1 61 IPR015633 GO:0000978|GO:0006357
Amo18g3001 172 Pfam GRF zinc finger 88 124 IPR010666 GO:0008270
Amo18g3001 172 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 1 61 - -
Amo18g3001 172 Pfam E2F/DP family winged-helix DNA-binding domain 1 53 IPR003316 GO:0005667|GO:0006355
Amo18g3001 172 SMART E2F_TDP_2 1 54 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3001 Amo-Chr18 126668423 126669858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3001 1 59 E2F-DP Transcription Factor Family AT3G48160 74.576 1.04e-24 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Amo18g3001 E2F_TDP 6.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3001 K09391 - adu:107464587 177.563