Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2998 ATGTTGTTTCCAAGCAATCCAGCTTTTATAGCAAGTTCAAATCTGGAAAATGGGCTCCTCCAAGCATATGAAAGCACAGCAATAAAGGAAGGGCTTCAAGACACACAAGAACTAACGGAATTACCTTTTAACGACATTTGGCGCACTTTGAGGCCGTTGCCGCCAGTTAAGAGCTACATCGAGAAGAAAGATAAGGAGGAGGACACCAACCGATCGGCCGGTCAGAAAGTTAATTATTGTTCTGTTTGTATAGAAGAGTTCAAGAACGGAGAGTTGATTCAACCTTTTGGAGTTTGTGTTCATGAGTTCCATTCAACTTGTATAAACTCTTGGTTGCAACGTGGAAAAACTAATTGTCCAATTTGTCGTGCTGATTTAGAATTTTAG 387 0.4057 MLFPSNPAFIASSNLENGLLQAYESTAIKEGLQDTQELTELPFNDIWRTLRPLPPVKSYIEKKDKEEDTNRSAGQKVNYCSVCIEEFKNGELIQPFGVCVHEFHSTCINSWLQRGKTNCPICRADLEF* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2998 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 48 126 - -
Amo18g2998 128 SUPERFAMILY RING/U-box 63 126 - -
Amo18g2998 128 PANTHER OS06G0666500 PROTEIN 48 126 - -
Amo18g2998 128 Pfam Ring finger domain 79 123 IPR001841 -
Amo18g2998 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 127 IPR013083 -
Amo18g2998 128 ProSiteProfiles Zinc finger RING-type profile. 80 123 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2998 Amo-Chr18 126598309 126599729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2998 80 124 C3H Transcription Factor Family AT4G00305 42.222 1.88e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2998 - K16282 adu:107470824 125.561