Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2883 ATGGTGAAGGAGAAAAGCAACAATAATGGGAGTAAGCAAAGGAAAGGGCTGTGGTCACCGGAGGAAGATGAGAAGCTGATAAGGTACATGATAACAAAGGGAGAAGGGTGTTGGAGTGACATTGCTAGAAATGCCGGCCTACAGCGCTGCGGCAAGAGCTGCCGCCTTCGTTGGATAAACTACCTCCGACCCGACCTTAAGCGCGGCGCCTTTTCTCTCCAAGAGGAAGACCTCATCATCCACTTGCACTCCATTCTTGGCAACAGATGGTCACAAATCGCGGCACGTCTACCTGGACGCACAGACAACGAAATCAAGAACTTCTGGAACTCCACGGTGAAGAAAAGGTTAAAACTGAACAACAACTCAACTTCATCACCAAACAACAGTGACTCATCAGAGCCTAATAGCATCAGGGACAACAACGTTGTCATGGGGACAACAACTACTAGTAATAATAACGGTATCATGCACATCAATGACCATCATCATCATCATCAGGATCTCATGACCATGTCCATGTGCATGGACAACTCATCCTCATCAACATCATCGTCTACCATGCATACCCATCACCATGCCATGGTCTTTGGGGATCCCTTTTCCATGGTAACCAACAACAACAATAATCATTATGAGATGGCGACCGGTGTAGCCGGTTTCCATGGCGCGATGGCCGGTGATCTGCCATTAGAAAATAGTTTTCATGGCGGCGATTATGGGAGGATGTTGGATGAAGAGAGTACTGATAAAATGGGGTTAGAAAGCGACTTGTCCCTTCCTCCATTAGAAAGTAGTATTAGAAGCACTGAAGAGATTATTATTATTAATAATGCCTCCTCAATTGATGACATGAAAAGCCATAACAACCACTTCAATAATAATAATAATACTAATAATGATAGTTGCTTCAAAAACACCGATAATCAGGTTCTGAATAACAACAACTACTCCAATGAAGAGGATTTGTTTGGGTTTGGAAATCATGGCCAAGTGGAAAACTTAAGAATGGGAGAATGGGACTTTGAGGGTTTGATGCAGGACATTTCCTATTTTCCTTCCCTTGATTTCCAAGTTTGA 1080 0.4361 MVKEKSNNNGSKQRKGLWSPEEDEKLIRYMITKGEGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSLQEEDLIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTVKKRLKLNNNSTSSPNNSDSSEPNSIRDNNVVMGTTTTSNNNGIMHINDHHHHHQDLMTMSMCMDNSSSSTSSSTMHTHHHAMVFGDPFSMVTNNNNNHYEMATGVAGFHGAMAGDLPLENSFHGGDYGRMLDEESTDKMGLESDLSLPPLESSIRSTEEIIIINNASSIDDMKSHNNHFNNNNNTNNDSCFKNTDNQVLNNNNYSNEEDLFGFGNHGQVENLRMGEWDFEGLMQDISYFPSLDFQV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2883 359 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Amo18g2883 359 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Amo18g2883 359 CDD SANT 18 62 IPR001005 -
Amo18g2883 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Amo18g2883 359 PANTHER MYB DOMAIN PROTEIN 55 7 359 - -
Amo18g2883 359 Gene3D - 15 67 - -
Amo18g2883 359 MobiDBLite consensus disorder prediction 119 152 - -
Amo18g2883 359 Gene3D - 69 142 - -
Amo18g2883 359 SMART sant 67 115 IPR001005 -
Amo18g2883 359 SMART sant 14 64 IPR001005 -
Amo18g2883 359 PANTHER TRANSCRIPTION FACTOR MYB83 7 359 - -
Amo18g2883 359 CDD SANT 70 113 IPR001005 -
Amo18g2883 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Amo18g2883 359 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Amo18g2883 359 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Amo18g2883 359 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2883 Amo-Chr18 123272484 123278523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2883 7 359 MYB Transcription Factor Family AT3G08500 44.722 5.57e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo18g2883 Myb_DNA-binding 5.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2883 K09422 - gmx:100796379 341.658