Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2879 ATGACTGAGGCTATCATTGAAGAAAGAGAGCAAGGCATTCAAGAAATTCAGCAGCAAATTGGTGAAGTAAATGAAATTTTTAAAGATCTTGCTGTGCTTGTGCATGAACAGGGAGCTATGATTGATGATATTGGGTCCAACATTGAGCAGTCTCATGCAGCAACTGCACAAGCAAGATCGCAACTTGCTAAAGCTTCAAAGACTCAAAGATCAAATTCTTCTTTGATGTTGGGTGTGGGAGCCGTGCTTCCTTGTTCTTCTTTTTCTTCTTCTGAGCTCAACCCTGCAATTCGGTCAGAGGTTTCATTTTCTGTTGGGTCTTGCCTCCTTCCTCATCCAGACAAGGCATCAGGCATAGCTGCCTTAGACATTAAGAAGCTTAAAGATGCAGGTATTTGCACTATTGAATCTGTTGCTTACACTCCTAGGAAGGATCTGTTGCAAATTAAAGGTATCAGTGAGGCTAAAGTTGACAAGATTATTGAAGCAGCTACTAAGTTGGTGCCTATGGGTTTTACTAGTGCGAGCCAGCTCCATGCTCAGCGGATGGAGATCATCCAGATAACAACTGGATCAAGAGAGCTTGACAAGATATTGGAAGGAGGAATTGAAACAAGTTCTATCACTGAGTTGTATGGTGATAGAAAATGA 651 0.4178 MTEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEQSHAATAQARSQLAKASKTQRSNSSLMLGVGAVLPCSSFSSSELNPAIRSEVSFSVGSCLLPHPDKASGIAALDIKKLKDAGICTIESVAYTPRKDLLQIKGISEAKVDKIIEAATKLVPMGFTSASQLHAQRMEIIQITTGSRELDKILEGGIETSSITELYGDRK* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2879 216 PANTHER DNA REPAIR PROTEIN RAD51 HOMOLOG A 115 214 - -
Amo18g2879 216 Pfam SNARE domain 40 76 IPR000727 -
Amo18g2879 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 214 IPR027417 -
Amo18g2879 216 Gene3D - 178 216 IPR027417 -
Amo18g2879 216 Gene3D - 115 177 - -
Amo18g2879 216 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 3 65 IPR000727 -
Amo18g2879 216 ProSitePatterns Syntaxin / epimorphin family signature. 9 48 IPR006012 GO:0005484|GO:0006886|GO:0016020
Amo18g2879 216 SUPERFAMILY Rad51 N-terminal domain-like 116 171 IPR010995 GO:0000166
Amo18g2879 216 SUPERFAMILY SNARE fusion complex 3 70 - -
Amo18g2879 216 SMART tSNARE_6 1 65 IPR000727 -
Amo18g2879 216 ProSiteProfiles RecA family profile 1. 184 216 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Amo18g2879 216 CDD SNARE_Qa 23 64 - -
Amo18g2879 216 Pfam Rad51 170 214 IPR013632 -
Amo18g2879 216 Gene3D - 1 85 - -
Amo18g2879 216 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 115 214 - -
Amo18g2879 216 Pfam Helix-hairpin-helix domain 117 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2879 Amo-Chr18 123026333 123028409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2879 1 75 SNARE and Associated Proteins AT5G46860 74.667 1.89e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2879 K04482 - aip:107623210 224.172