Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2866 ATGACAGACCCACATTATTCCAATCTATACGCTTCATCAGGAAGGTTCAACTTCATGCCCCTCCACCCTCATTACTTCCCTTCTTCCTCCTCCTCCTCTTCTTCTTCTTTCATTTCTAATCAAAATTCCATTAATAGTTCCCTCTTCTCATCACCATCGTATCCTCTCTATTTCTCAAACACCAGATTATTCTCCGTCCAATTGGAACCACCCTCTTCATCATCTTCTTCTTCCGTGGCAGCACTGCCTCCTCCTCCTTCTTCCCCTCCTCTCATAGAAGCCCTTCCTTTCATAAACACTATAAGCCTCAAAAACCATAGCAACAACAATAGCAGTGATCAAGAAGTAGTGGTGGACAAGAAGAGAAAAGACAACAACAAAAAAGATCAAGAGAATCTTTTGGCTGATGATGATTATGATGATAACGAAGGTGTTGCCGTAGCGCTACGAATAGGGCTTCCTAATAGCGTGTCTGATAATACTTCCGGTATTGATGATCGGCAAAAGAAGAAGAAGATCTCATCAAACTCAGAAGAAATTGTGGGAGAAAAAGATGAAGTGATGAGCGTGGTTTCTGAGCATCACCCTTCGTTGTTAGAGAGATTTAACAATAACAAGACACAGTTTCAGTATTGGATTCCCACAGCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCATGCCCAGTCTGCTCCAAGACTTTCAACCGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGACCAGATTCTCTAAAAGGAACACAACCAACAGCAATGCTAAGGCTTCCATGCTTCTGTTGTGCGCCAGGTTGCAAGCACAACATAGACCACCCAAGAGCGAGGCCTCTCAAGGACTTCAGAACCCTCCAAACGCATTACAAGCGAAAGCACGGCGTGAAACCCTACGCTTGCCGGAAATGTGGCAAGCCGTTTGCCGTGAAAGGCGATTGGCGGACGCATGAGAAGAACTGCGGCAAGATCTGGTATTGTTTGTGTGGGTCTGATTTCAAGCATAAGAGGTCCCTGAAGGATCATGTCAAAGCCTTTGGCCATGGACATGGTGCTTTTGGTATTGATTGCATGCAAGAGGAGGATGAAGCAGCTTCCGAAGTTGAACATGATGGTGATTGCTCCTTGTAG 1164 0.4467 MTDPHYSNLYASSGRFNFMPLHPHYFPSSSSSSSSSFISNQNSINSSLFSSPSYPLYFSNTRLFSVQLEPPSSSSSSSVAALPPPPSSPPLIEALPFINTISLKNHSNNNSSDQEVVVDKKRKDNNKKDQENLLADDDYDDNEGVAVALRIGLPNSVSDNTSGIDDRQKKKKISSNSEEIVGEKDEVMSVVSEHHPSLLERFNNNKTQFQYWIPTASQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGVKPYACRKCGKPFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHVKAFGHGHGAFGIDCMQEEDEAASEVEHDGDCSL* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2866 387 PANTHER ZINC FINGER PROTEIN WIP2 35 381 - -
Amo18g2866 387 SUPERFAMILY beta-beta-alpha zinc fingers 219 248 IPR036236 -
Amo18g2866 387 MobiDBLite consensus disorder prediction 115 134 - -
Amo18g2866 387 PANTHER ZINC FINGER PROTEIN WIP2 35 381 IPR043584 GO:0003700|GO:0010468
Amo18g2866 387 Gene3D Classic Zinc Finger 225 248 - -
Amo18g2866 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Amo18g2866 387 MobiDBLite consensus disorder prediction 103 137 - -
Amo18g2866 387 Gene3D Classic Zinc Finger 279 363 - -
Amo18g2866 387 SUPERFAMILY beta-beta-alpha zinc fingers 294 330 IPR036236 -
Amo18g2866 387 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Amo18g2866 387 MobiDBLite consensus disorder prediction 157 178 - -
Amo18g2866 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 310 330 IPR013087 -
Amo18g2866 387 SMART c2h2final6 226 248 IPR013087 -
Amo18g2866 387 SMART c2h2final6 336 359 IPR013087 -
Amo18g2866 387 SMART c2h2final6 310 330 IPR013087 -
Amo18g2866 387 MobiDBLite consensus disorder prediction 163 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2866 Amo-Chr18 122235009 122239064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2866 145 380 C2H2 Transcription Factor Family AT3G57670 64.173 4.84e-117 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo18g2866 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2866 - - ahf:112707475 648.277