Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2864 ATGTCTTCTCATCACCATCAATGCCAGAACAACATTATGTTGCATTTCCGTTTCTTCAAGGCTATACTCAAAACTAATCTTCAAAGGATTATTTTCACACAGAAAATACCCAATAAGTTTTCAAGGAGACATGGAAGCGCTCTTTCAAATCCAGTGTTTCTTAAGCCTCCAGATGGCACTCTATGGAAAGTGTATTGGACAAAAAAGAATAGTGATGAAGTTTGGTTTGTAAAAGGATGGAAGGAATTTACCAAAAACTACTCTCTTAATGAAGGACATTTAGTTGTGTTTAAATATGAAGAAACTTCTCAGTTTGATGTAATCATACTTGAGATAAATGATCTAGAAATAGATTATTCCAAATATGAGACTGTGAATAGAAAGGGCAAATGTGACCAGAGAGATGAGAAAACAGTTGGAATCTTAAAGGAAATCCCTGTAAAAAATAATGACGCTGGAAAAAGATTGACATTGTTTTCTCCTCAGCCTCATATGAAAGTCAGAGGTGAGAGCTCTATTCGAAGAAGAACATCATCTTTGAATTGGCCAAAGGAACTTAAAGCTCAGGAAATAGCTCAGAAATTCATCTCCTATAACCCTTTCTTCACACTGTTCATAAAGCCAAGTTACCTCACAGAATACCAAGTGAATGTACCGACTTTGAAAGGTTACATTGAGGACAAGGTGAAGGACGTGGCGCTTAAGGTTGGGGAAAGACAATGGCAAGTAAAGTTGCTCCCTTGTCGCAACTCAGCTCGCCGCCTCTCAGGTGGTTGGTCCTTGTTTGTCCATGAGAATGGATTGCAAGCTGAAGATGTTTGTGTCTTTGAACTGATTAACATGGAAGATTCAGTTTTTAAGGTTCATGTTTTCAAAAGGTAG 882 0.3776 MSSHHHQCQNNIMLHFRFFKAILKTNLQRIIFTQKIPNKFSRRHGSALSNPVFLKPPDGTLWKVYWTKKNSDEVWFVKGWKEFTKNYSLNEGHLVVFKYEETSQFDVIILEINDLEIDYSKYETVNRKGKCDQRDEKTVGILKEIPVKNNDAGKRLTLFSPQPHMKVRGESSIRRRTSSLNWPKELKAQEIAQKFISYNPFFTLFIKPSYLTEYQVNVPTLKGYIEDKVKDVALKVGERQWQVKLLPCRNSARRLSGGWSLFVHENGLQAEDVCVFELINMEDSVFKVHVFKR* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2864 293 CDD B3_DNA 201 292 IPR003340 GO:0003677
Amo18g2864 293 PANTHER B3 DOMAIN-CONTAINING 16 292 - -
Amo18g2864 293 ProSiteProfiles B3 DNA-binding domain profile. 19 113 IPR003340 GO:0003677
Amo18g2864 293 Gene3D - 13 113 IPR015300 -
Amo18g2864 293 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 16 292 - -
Amo18g2864 293 Gene3D - 182 293 IPR015300 -
Amo18g2864 293 ProSiteProfiles B3 DNA-binding domain profile. 239 293 IPR003340 GO:0003677
Amo18g2864 293 SMART B3_2 18 113 IPR003340 GO:0003677
Amo18g2864 293 SMART B3_2 201 292 IPR003340 GO:0003677
Amo18g2864 293 SUPERFAMILY DNA-binding pseudobarrel domain 199 292 IPR015300 -
Amo18g2864 293 CDD B3_DNA 16 110 IPR003340 GO:0003677
Amo18g2864 293 SUPERFAMILY DNA-binding pseudobarrel domain 17 120 IPR015300 -
Amo18g2864 293 Pfam B3 DNA binding domain 210 293 IPR003340 GO:0003677
Amo18g2864 293 Pfam B3 DNA binding domain 35 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2864 Amo-Chr18 122060914 122062996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2864 18 292 B3 DNA Binding Superfamily AT3G18990 27.729 6.84e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo18g2864 B3 6.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2864 - - lang:109346569 271.937