Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2845 ATGAGTGTTATGTATAGTCCTGTTCTCAAATACTCACATGGAGTTCTAAGAAAAAGCCATGAAATGATTTCAAATATTAACCATCATCAGCATCAGGATCAAAATCATCATCATCAACAACAACAGCAGCAAAATTCTAGATTATTGAGGTACCGTTCTGCTCCAAGTTCATTCTTGGAAAGCCTTGTTGATATTAACAATGGTGGTGCTAGTGTCAATGAGGACCCTACTCTGGGACATGGTTGTTACCATCATATTCCATCCACAAGCTCATCATCAGAGGCCATGTTTTCCAAGCCGATACAATCAAACAATGGATGGAGCCGCCGCGATTCGGAACCTGTGCAAGTCCAAGAAGAGTACGGAGGAAGCAACAACAAGCCTACTGTGTTGAAGGAGGAAACTGGGAATTCTTCTTTCTTAAAGGAACAAAATGGTTACTCTTATTGGTCTCAGCAAATTCAAAGTTTGCCAACAAATAATAATGGTTATGATGGCTCTTTTGGTGTAGTGAACTCTGTCAATTCAGATCACTCTACTCAATCTGAAATGGGTATTAGGAATTGCTCCAATCTCATCAGGCAAAAGAGTTCTCCAGCTGGATTTTTCCCCAGTGAAAATGCATTGAGAGAGGTTGAGAGGTTTAGATCCAATGATGTCTCAAACGGACAACCAACTGCTCTTTCTTTCTCATCTAATAGGTCATCCTCTTGCTTGAAAAGGATGCCACAGATTGCCGAATACGAAAACGAAAGTCATGAAGGAACAATTGACCAAAGCAGAAACCTGGTAAATGAGAATGACAGCTCTAAGTACTATGTGCCTAGCTTCACCGGTGAAGTTTGGGACGCCTCTTCATTCAATTCCCAAAAAGCAGCAAGTGCAGATGAAATCATGTTCTCCGCTTCAACTGCTTTGGAATCTCAGGATTCAGACTTCTGCTCACAAAATCTTGGTTTGATTCATCATTTGAGTATGCCTAGTTCTTCTACTCAGATGGGATCTATGGAGAAGTTTCTTCAACTCCAAGGAACCGTTCCATGCAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCTAGAAGCATTGCAGAGAGGGTACGAAGAACACGAATTAGCGAAAGAATCAAGAAATTGCAAGGCCTTTTCCCGAAATCGGACAAGCAAACAAGCACAGCAGAGATGCTGGATTTGGCTGTTGAGCACATTAAAGAACTGCAGGAACAAGTTAAGATGCTCACAAATATTAGGTCAAAGTGTAGATGTACAAATACTCAGAAGCAATATTCTTGA 1293 0.4114 MSVMYSPVLKYSHGVLRKSHEMISNINHHQHQDQNHHHQQQQQQNSRLLRYRSAPSSFLESLVDINNGGASVNEDPTLGHGCYHHIPSTSSSSEAMFSKPIQSNNGWSRRDSEPVQVQEEYGGSNNKPTVLKEETGNSSFLKEQNGYSYWSQQIQSLPTNNNGYDGSFGVVNSVNSDHSTQSEMGIRNCSNLIRQKSSPAGFFPSENALREVERFRSNDVSNGQPTALSFSSNRSSSCLKRMPQIAEYENESHEGTIDQSRNLVNENDSSKYYVPSFTGEVWDASSFNSQKAASADEIMFSASTALESQDSDFCSQNLGLIHHLSMPSSSTQMGSMEKFLQLQGTVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQGLFPKSDKQTSTAEMLDLAVEHIKELQEQVKMLTNIRSKCRCTNTQKQYS* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2845 430 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 426 - -
Amo18g2845 430 CDD bHLH_AtbHLH_like 361 413 IPR045239 -
Amo18g2845 430 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 37 426 - -
Amo18g2845 430 MobiDBLite consensus disorder prediction 29 48 - -
Amo18g2845 430 Pfam Helix-loop-helix DNA-binding domain 361 407 IPR011598 GO:0046983
Amo18g2845 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 356 406 IPR011598 GO:0046983
Amo18g2845 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 423 IPR036638 GO:0046983
Amo18g2845 430 SMART finulus 362 412 IPR011598 GO:0046983
Amo18g2845 430 Coils Coil 396 416 - -
Amo18g2845 430 Gene3D - 358 428 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2845 Amo-Chr18 120657256 120661049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2845 30 424 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 33.012 1.22e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo18g2845 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2845 - - adu:107462676 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2845 18 120657256 120661049 Amo08g1888 08 30915381 30919522 hybridization