Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2839 ATGGATAGGGTGCATGAGACGTATGCTTCTGAGTTAAATGGTAAGGACTTCGCATATGACGGGGAGAAAAGTCTGTTTACCATTGGTTCTCTTCCAAGCAACAAGCTTGAGTTTGAAGTTGTTCTGGAGGATGTTGTTTCGAATAGAAATAATGGTAACTGTAGCCCTGATGGTCATGGGGACAATGAAAGTGACAAAAAGAGGATGCGACGCCCGTATCGTGCGAAGAAATTTAAAGTAGAGATTAGCTATGCCGCCAAAATTCCAATGCAGGCCATTGCCAATGCCTTGCGTGGGCAGGAATCGGAGAATTTCCAAGAAGCCATCAGAGTGCTTGATATTATATTGAGGCAACATGCTGCTAAACAAGGTTGCCTCCTAGTTCGGCAATCCTTCTTCCACAATGATCCGAGGAATTTTGCTGAAGTTGGAGGTGGTGTGCTTGGCTGCAGAGGATTCCATTCAAGTTTCAGAACTACTCAGAGTGGCCTGTCTCTGAACATAGATGTCACAACTACTATGACAATCCAGCCTGGACCTGTTGTGGACTTCCTAATTGCCAATCAAAATGTGCGAGATCCATTTCAGCTTGACTGGGCAAAGGCCAAAAGGACCCTAAAAAATCTGAGGATTAAAGTAAGCCCATCCAATCAAGAGTACAAAATTACAGGTCTCAGTGAACTCCCATGCCGAGATCAGACGTTTTCTCTGAAGAAAGGTGGAAGGGATGGTGATGATGGTACTGAAGAAGTGACTGTTTATGATTATTTTGTCAATACTCGTAGGATAGATCTTCGATACTCTGCTGAGCTTCCTTGTATCAATGTTGGCAAGCCTAAACGACCGACATACTTCCCCATTGAGCTTTGTGAATTGGTGTCCTTGCAACGTTATACAAAATCGCTGTCCACGCTTCAAAGGGCTTCATTGGTAGAGAAGTCCAGGCAGAAGCCACCAGAGAGGATGAGGGTTTTATCTGATGCACTAAAAACCAGCAACTATGGTTCTGAACCTATGCTTCAAAATTGTGGAATTTCTATAAGCACTGGCTTTACTCAAGTGGATGGTCGTGTTCTGCCTTCACCAAGGTTGAAGCTTGGCAATGGTGAGGACTTAAATCCAAGGAATGGGAGATGGAATTTTAGTAATAAGAGTTTTGTGCAGCCAATAAAGATAGAACGGTGGGCTGTAGTTAACTTTTCTGCACGATGTGATGTAAGAGCTCTTGTGAGGGATATGATTAGAGTTGCAGGAACGAAAGGAATTTCAATGGAAGATCCATTTGATGTGTTTGAAGAGAGTCATCAGTTTAGGCGTTCCCCACCAATGGTTAGAGTGGAGAAGATGTTTGAAAGCATCCAGTCTAAACTTCCTGGAGTTCCTCAGTTCCTTCTATGTCTAATTCCCGAGAGGAAAAACTGTGAAATTTATGGTCCATGGAAAAAGAAAAATCTTACTGAGTATGGAATTGTTAGCCAGTGCATGTGTCCTTTAAGGGTCAATGACCAGTTTCTGACTAACGTTTTGATGAAGATAAATGCCAAGCTTGGTGGATTGAATACATTATTAGGCGTTGAACACTCTCCAGCTCTTCCAGTCGTTTCAAAAGCACCCACACTTATCCTGGGCATGGATGTTTCGCATGGCTCACCAGGGCAATCTGATATTCCTTCAATTGCAGCGGTGGTCAGCTCTAGACAATGGCCTCTTATATCGAAGTATAGGGCCTGTGTTCGTACCCAGTCTGCAAAGGTTGAAATGATAGATAACCTGTTCAAGAAAGTATCTGACAATGAGGATGAAGGAATTATAAGGGAACTTCTACTTGATTTCTATGTTAGTTCTGCGAAGAGAAAGCCAGACAATATAATTATTTTCAGGGATGGTGTTAGTGAATCACAGTTCAATCAAGTTTTGAACAAAGAGCTTGATCAAATCATTGAGGCATGTAAATTCCTTGATGAAAAGTGGGAGCCCAAGTTTGTGGTTATAGTTGCTCAGAAGAACCACCACACAAGATTCTTCCAGTCTGGTTCTCCTGACAATGTCCCACCTGGAACTGTTGTTGACAACAAAATTTGTCATCCAAGAAACTATGATTTCTACCTATGTGCACATGCCGGAATGATAGGCACTAGCAGGCCTACACACTACCATGTTCTTCATGATGAGGTTGGCTTTAGTGCTGATGAGCTACAGGAGCTTGTACATTCTCTGTCATATGTGTATCAGAGGAGCACCACTTCCATTTCTGTTGTTGCTCCAATATGCTACGCACACTTGGCTGCAACCCAGGTGGGGCACTTCCTCAAATTTGAAGACAAATCTGAGACATCTTCAAGTCATGGTGGACTGAGTGCTGCTGGAGCTGTCCCTGTCCCGCAGTTGCCGAAATTGCAGGACAGTGTTTGCAACTCAATGTTCTTCTGCTGA 2433 0.4324 MDRVHETYASELNGKDFAYDGEKSLFTIGSLPSNKLEFEVVLEDVVSNRNNGNCSPDGHGDNESDKKRMRRPYRAKKFKVEISYAAKIPMQAIANALRGQESENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPRNFAEVGGGVLGCRGFHSSFRTTQSGLSLNIDVTTTMTIQPGPVVDFLIANQNVRDPFQLDWAKAKRTLKNLRIKVSPSNQEYKITGLSELPCRDQTFSLKKGGRDGDDGTEEVTVYDYFVNTRRIDLRYSAELPCINVGKPKRPTYFPIELCELVSLQRYTKSLSTLQRASLVEKSRQKPPERMRVLSDALKTSNYGSEPMLQNCGISISTGFTQVDGRVLPSPRLKLGNGEDLNPRNGRWNFSNKSFVQPIKIERWAVVNFSARCDVRALVRDMIRVAGTKGISMEDPFDVFEESHQFRRSPPMVRVEKMFESIQSKLPGVPQFLLCLIPERKNCEIYGPWKKKNLTEYGIVSQCMCPLRVNDQFLTNVLMKINAKLGGLNTLLGVEHSPALPVVSKAPTLILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSAKVEMIDNLFKKVSDNEDEGIIRELLLDFYVSSAKRKPDNIIIFRDGVSESQFNQVLNKELDQIIEACKFLDEKWEPKFVVIVAQKNHHTRFFQSGSPDNVPPGTVVDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLHDEVGFSADELQELVHSLSYVYQRSTTSISVVAPICYAHLAATQVGHFLKFEDKSETSSSHGGLSAAGAVPVPQLPKLQDSVCNSMFFC* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2839 810 Coils Coil 636 656 - -
Amo18g2839 810 Pfam PAZ domain 182 310 IPR003100 GO:0005515
Amo18g2839 810 Gene3D - 530 810 IPR036397 GO:0003676
Amo18g2839 810 CDD PAZ_argonaute_like 178 293 - -
Amo18g2839 810 SUPERFAMILY PAZ domain 173 334 IPR036085 GO:0005515
Amo18g2839 810 ProSiteProfiles Piwi domain profile. 463 771 IPR003165 GO:0003676
Amo18g2839 810 SUPERFAMILY Ribonuclease H-like 447 769 IPR012337 -
Amo18g2839 810 Pfam Argonaute linker 2 domain 320 365 IPR032472 -
Amo18g2839 810 Pfam Mid domain of argonaute 373 426 IPR032473 -
Amo18g2839 810 ProSiteProfiles PAZ domain profile. 220 294 IPR003100 GO:0005515
Amo18g2839 810 CDD Piwi_ago-like 338 770 IPR045246 -
Amo18g2839 810 Gene3D - 358 524 - -
Amo18g2839 810 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 809 - -
Amo18g2839 810 Gene3D paz domain 172 298 - -
Amo18g2839 810 MobiDBLite consensus disorder prediction 49 69 - -
Amo18g2839 810 SMART DUF1785_2 126 178 IPR014811 -
Amo18g2839 810 Pfam N-terminal domain of argonaute 2 116 IPR032474 -
Amo18g2839 810 Pfam Argonaute linker 1 domain 128 175 IPR014811 -
Amo18g2839 810 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 1 809 - -
Amo18g2839 810 SMART Piwi_a_2 463 771 IPR003165 GO:0003676
Amo18g2839 810 Pfam Piwi domain 464 770 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2839 Amo-Chr18 120559230 120567253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2839 10 810 Eukaryotic Initiation Factors Gene Family AT5G43810 35.569 2.62e-158 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2839 K11593 - gmx:100820376 1446.8