Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2810 TCCGCTCATGTCCCTGGAACGGACAAGGCTTCTATACTTGGGGAAGCCATCAATTACGTGAAACAGCTTCAAGAATGTGTAAAGGAGCTGGAAAAGCAGAACAATGATAATAAGAGGGGCCCAACAGAGCCAGTCATATTCCTCAACAAGACTCAGCTGCTGTGTCGGTACAACGAAGACAGCAGCAGCGAGGAGGAGGAGGAGGTGGAGGAGGATTGGCGTAGCAAGGAGGAAAAACAAGTGCTCCTAGATGTTGAAGCAAGAATGCTGGAGAAGGAGAAGGAGGTGCTGATTGAGATCCACTGCGAGAAAGAGAATGAAATTGAGGTGAAGATATTGGAGCAGCTTGAAGATATTGGTGTTATTTTTGAAAAGGGTTAG 381 0.4672 SAHVPGTDKASILGEAINYVKQLQECVKELEKQNNDNKRGPTEPVIFLNKTQLLCRYNEDSSSEEEEEVEEDWRSKEEKQVLLDVEARMLEKEKEVLIEIHCEKENEIEVKILEQLEDIGVIFEKG* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2810 126 CDD bHLH_AtbHLH_like 4 31 IPR045239 -
Amo18g2810 126 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 2 119 - -
Amo18g2810 126 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 47 IPR036638 GO:0046983
Amo18g2810 126 Gene3D - 3 42 IPR036638 GO:0046983
Amo18g2810 126 Coils Coil 13 40 - -
Amo18g2810 126 PANTHER BHLH TRANSCRIPTION FACTOR 2 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2810 Amo-Chr18 119570359 119571455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2810 1 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 34.677 6.97e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2810 - - adu:107459735 180.259