LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo18g2799	ATGACTCTTGACTTCCACACCAACAAGAAGGTTCTAGAAGAAGTTGCCCTCATCCCTTCCAAGAGGCTCCGCAACAAGATCGCAGGCTTCTCCACTCACCTCATGAAGCGGATCCAGAAGGGACCCGTCAGAGGCATCTCCCTCAAGCTTCAAGAGGAGGAGAGGGAGCGTCGCATGGACTTCGTTCCTGATGTGTCCGCCATTGACACTCAACACATCGAGGTCGACAAGGAAACCATTGACATGCTTCAGTCTCTAGGTATGTCTGACATCCCTGGAATCACTCAGGTCGATCCCGTTCCTGTTCAGCAGATCCCGTTTGGTCGCCCTGGCGCTGGATTCGGTGGTGCTCAGAGGAGGCATGGTGTTAAGTTCACGGATAAAGAACCGCTGAGCATTTTTATCCATTTGACTGATACTTTGTCGGATCTGAAGAGGAACATATTGCAGAAGGCAGGGTTAGCTGGGGCCAAGTCGGTGAATAAGAGTTTTTCGGAGGTGAGAATACACGAGTTGTTTGCCAAGTTGGAAGACCGAGTGGACAGTTCCTGGGCTTTAGCGCCAAATCCTCAGTCGACGACGGTGGGGGGTGCTTCTACTTTGATGCCTGTCGTTGCACCCAGGTGTCTCCTACCTGCACCTCCACCTGTTCTAGCACCGGCAGATAGGTCTCCTAGTTTGATTACTGGTCTTGTTGGGAGTGGTGAGCCGGATCACTATGAGGACGCGATGCGGGACTATGATTCGGACGATGAGCCCGATCACATATCAGGGGATAGTGAGGACGAGACTCCAGTGCCCCCACTTGCACCTCAGGGGCCATCCAGTTCTGGGTCGCACCAACAACCGCCGCATTTCTCGACGCTCAATCTGGAAGCATTGGGATCAGGCCAACGGTTTTGCCAGGCCCTGGTCAAGGCGATTGAGCGCAACCTGAAAGATGCGAGGTGCTTCACGGTTACTCTGTTCGACAGACATCAGTCTGAGTATACCATGGCTGAGACGACTCCTACGGGAACTTCTCGCTTGGGACGTATCGGGTTTCCCTCAGAAATCGCACTTGTGAATGCAGGTACTTTCAAGCTCTCCATTACCCTTGCTGCCATGCGATTGCATGCTGTGCTCAGTTCCGGTTAG	1137	0.5312	MTLDFHTNKKVLEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIDTQHIEVDKETIDMLQSLGMSDIPGITQVDPVPVQQIPFGRPGAGFGGAQRRHGVKFTDKEPLSIFIHLTDTLSDLKRNILQKAGLAGAKSVNKSFSEVRIHELFAKLEDRVDSSWALAPNPQSTTVGGASTLMPVVAPRCLLPAPPPVLAPADRSPSLITGLVGSGEPDHYEDAMRDYDSDDEPDHISGDSEDETPVPPLAPQGPSSSGSHQQPPHFSTLNLEALGSGQRFCQALVKAIERNLKDARCFTVTLFDRHQSEYTMAETTPTGTSRLGRIGFPSEIALVNAGTFKLSITLAAMRLHAVLSSG*	379

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo18g2799	378	SUPERFAMILY	Rps17e-like	2	39	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Amo18g2799	378	ProSitePatterns	Ribosomal protein S17e signature.	18	33	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Amo18g2799	378	PANTHER	40S RIBOSOMAL PROTEIN S17	1	113	-	-
	Amo18g2799	378	MobiDBLite	consensus disorder prediction	238	252	-	-
	Amo18g2799	378	PANTHER	40S RIBOSOMAL PROTEIN S17	1	113	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Amo18g2799	378	MobiDBLite	consensus disorder prediction	273	287	-	-
	Amo18g2799	378	Gene3D	-	1	39	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Amo18g2799	378	Pfam	Ribosomal S17	1	97	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Amo18g2799	378	MobiDBLite	consensus disorder prediction	228	287	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo18g2799	Amo-Chr18	119205412	119208523	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo18g2799	1	121	Cytoplasmic Ribosomal Protein Gene Family	AT5G04800	75.610	6.89e-57	181

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo18g2799	K02962		-	gmx:100527036	194.897