Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2786 ATGCTTGTATGCGGGATAGGTACTGGTGGTACCATCACTGGTGCAGGAAAATATCTGAAAGAGAAGAATTCTAACATAAAGTGCACGTCTGCATCCTCCATCGAAGTTCGTTCACGTGCTGCTTTGGTTATTACAGCTGAATCTTTAGCTCTGACCCTGCAAGCATCTTGCAATTTAAAAGATTCAAAAGAACTTTTTGAAAGATGTCTAAATGCACAGAAAGTCTTACTTCCTGATGACCATATTCAGGTGGATTTGACACCGCACATGCAGCTGCTCGTGGCAATTAAGTTCCGTGGAGTGGAGGCTGACATTAACTTCAACATAGAAGACTACGAAGAAGACTTGAACACTGGGTTTCCAAGAGGAAGTTCCAAATATAGAGGCGTTACCTTGCACAAGTGTGGAAGATGGGAGGCTTGTATGGGCCAATTTCTAGGCAAAAAGTACGTTTATCTGGGCCTCTTTGATACTGAGATTGAAGCTGCCAGTGAAGTTTTTCTCTCCAAAGAAATATGCAAAGATCTTCCAGTGTGTCAAGAGCTTTTGGGTGAGTTCTTCATTGATTTGTCAACTACAGCTTCAGTTAGATTGCCAAAGGAGAGCATCACCGATCTTATTAATGGTAAGTCTAATTATAAGTCCCAAGGAGAAAAGGCCATTCATCTCATACCCTTTGTGCTTTTCCTTTGTGCTTTCATTCTTTGGATTTTCTCTCATCCCTGCACCTTATAA 735 0.415 MLVCGIGTGGTITGAGKYLKEKNSNIKCTSASSIEVRSRAALVITAESLALTLQASCNLKDSKELFERCLNAQKVLLPDDHIQVDLTPHMQLLVAIKFRGVEADINFNIEDYEEDLNTGFPRGSSKYRGVTLHKCGRWEACMGQFLGKKYVYLGLFDTEIEAASEVFLSKEICKDLPVCQELLGEFFIDLSTTASVRLPKESITDLINGKSNYKSQGEKAIHLIPFVLFLCAFILWIFSHPCTL* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2786 244 Pfam AP2 domain 125 163 IPR001471 GO:0003700|GO:0006355
Amo18g2786 244 Gene3D AP2/ERF domain 125 166 IPR036955 GO:0003700|GO:0006355
Amo18g2786 244 CDD AP2 125 163 IPR001471 GO:0003700|GO:0006355
Amo18g2786 244 PANTHER FLORAL HOMEOTIC PROTEIN APETALA 2-LIKE ISOFORM X1 118 163 - -
Amo18g2786 244 PANTHER FLORAL HOMEOTIC PROTEIN APETALA 2-LIKE ISOFORM X1 95 117 - -
Amo18g2786 244 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 2 35 IPR036052 -
Amo18g2786 244 Gene3D - 1 31 IPR036052 -
Amo18g2786 244 SMART rav1_2 126 170 IPR001471 GO:0003700|GO:0006355
Amo18g2786 244 SUPERFAMILY DNA-binding domain 125 163 IPR016177 GO:0003677
Amo18g2786 244 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 118 163 - -
Amo18g2786 244 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 95 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2786 Amo-Chr18 118753190 118755077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2786 96 163 AP2-EREBP Transcription Factor Family AT4G36920 72.093 6.27e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo18g2786 AP2 7.5e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2786 K09284 - gmx:100786333 130.568