Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2763 TTGTCGCCGTCTGTCGGAGTGAGAGACTGCTGCCGCCGTCCGTCGCACTCAAGAACTTCCGTCTTCGTGCTCTCGGGCCTCTCGCCGGATCCTCCGCGTCGTGTGCTCGCATCTCGCCTCTCTCCTCTTGCTCGGCTGCTCGCGCCTTCCTCCGCCAGTGAGTGCTCGAGCTGTGCGTGTTGCTGCTCCCCCACCGCTGCTCTTCTGCCGGCATCCGTCGCGCTCAACACCACCGTCTTCCCACGCTTTTGCCGCCGTTCGCCGTCGTGCTCGCCACCTGGTCTCCGTCTCGGTCGCGCTTCTGCCCTTCTGCTCAGACTGCTTAGAACGAAGCTCCTGCTGCGCCATCCGCGATTAACTGCGCCTGGAGCTCCGCGGTCCGCGTTTCACGGCGCCTCGAGCTTCGCCGTCCACGATTTACCGCGCGCTCCACCGTCGAGTCTCTCCATCTCGATCATTGCCGCCTTCTCTGGCCACCGTCGCGGCCGACCCGCCGTCCTCTTCTCCGAGCTCTATTGTTTCGCCATGCCAGCTTTGATGTCAGCTAGGTTTCTTCTTCTTGTTGGAGAGTCCTTCCCCATTAGAAGGGCATTGGCTACTCATAAAAATGCTTCTTCTTTGTTGCACACAAGTATTCATTGTATGAGCCAAGTGGAACCACCAAATCATGGTTCCTTAACCCTCTCAAGTGTTGGTTTCCAAAGTGAAGTTGATAAACCAATTAACAAAGGTGGCAAGTCTAGCAGTAAGGTAAAGCCATTGTTGAGTTCATCCCCTGGGTCCCTTAAGAGCAAAGGCATAGGGAAACCTATTGGTTCCAGTGAGAAGAAGAAAGCGTTTGCGATTGTTGAGAGGAAGAAACAACAAATTGAGGCTGCCCCATTTGCAGCGAAATCGTTCTCTGAACTTGGGTTGCCCCTTGTTCTGATTGAGAGATTGGAGAAAGAGGGGTTCAGTGTTCCAACTGAAGTTCAGTCTGCAGCTGTTCCTACCATTCTGCAGAACCATGATGTCATAATTCAGTCTTATACGGGTTCGGGGAAGACATTGGCTTATCTGCTTCCTATACTATCATCTATTGGTCCACTGATGAACAATGTTTCCAAGAGTGACAGTGGTGGTGATTCTGGTGGGAAAATGGGAATAGAAGCAGTGGTTGTTGCTCCCTCTAGGGAGCTAGGGATGCAGATAGTGAGGGAGTTTGAGAAGATACTAGGAGTGGAGAACAAGAAAGTGGAAGAAGCTCTCAAGAAGAATAAACCTGCCATTATTGTTGGCACACCTGGTAGGATAGCGGAACTTAGTGCAGCAGGGAAGCTTCGGACACATGGCTGTCGCTATTTGGTATTGGATGAAGTTGATGAGCTCTTGTCATTCAATTTTCGGGAGGACATGCACCGGATATTGGAGCATGTAGGCAGGAGATCAGGTGCAGACCCGGATCCAAATGTTAAAAGGACTGAGCGTCAGTTAATTATGGTGTCTGCAACTGTGCCGTTTTCTGTTGTAAGAGCAGCGAGGAGCTGGGGATGTGATCCACTTCTCGTCCAAGCTAAGAAAGTTATCCAGCTTGATACTGTCTCGCCTTTGGGCCCTATCAATTTGTCAAGGCCTTCAGTCGGTTCTACTCCAGACCCAACTAAGCCATCTCAGGCATCAGTAGAGAGTTTGCCTCCGGCTTTGGAACACTATTATTGTGTAGCGAGGTTACAGCACAAGGTCGATACCATGAGAAAGTGTATTCATGCCCTGGATGCAAAAGTTGTAATAGCTTTCAGGAACAACAGTAAGCAACTAAAGGATGTCGTCTTCAAGCTGGAGGCCCGTGGAATGAAAGCGGCAGAGTTGCATGGGGATCTTGGGAAGCTTGCTAGGTCATCAACTTTGAAGAAATTCAAGAATGGCGAGGTGAGAGTTCTGGTGACAAATGAATTATCAGCTAGGGGTTTGGATGTGGCAGAATGTGATCTCGTGGTTAATCTGGACTTACCTACGGATTCAACTCACTATGCACACCGAGCTGGCCGAACTGGTCGGCTTGGTAGGGATGGTACAGTGCTAACCATATGTGAAGAGTCCGAAGTTTTTATTGTGAAGAAAATGGAGAAGCAGCTTGGAGTAACTGTGGCGTTCTGCGATTTTGTTGAGGGAAAGATGCTTGTCAACCAAGAAGAGAAAGCACTCAGCACTTCAAGAAAATGA 2202 0.5027 LSPSVGVRDCCRRPSHSRTSVFVLSGLSPDPPRRVLASRLSPLARLLAPSSASECSSCACCCSPTAALLPASVALNTTVFPRFCRRSPSCSPPGLRLGRASALLLRLLRTKLLLRHPRLTAPGAPRSAFHGASSFAVHDLPRAPPSSLSISIIAAFSGHRRGRPAVLFSELYCFAMPALMSARFLLLVGESFPIRRALATHKNASSLLHTSIHCMSQVEPPNHGSLTLSSVGFQSEVDKPINKGGKSSSKVKPLLSSSPGSLKSKGIGKPIGSSEKKKAFAIVERKKQQIEAAPFAAKSFSELGLPLVLIERLEKEGFSVPTEVQSAAVPTILQNHDVIIQSYTGSGKTLAYLLPILSSIGPLMNNVSKSDSGGDSGGKMGIEAVVVAPSRELGMQIVREFEKILGVENKKVEEALKKNKPAIIVGTPGRIAELSAAGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSGADPDPNVKRTERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKVIQLDTVSPLGPINLSRPSVGSTPDPTKPSQASVESLPPALEHYYCVARLQHKVDTMRKCIHALDAKVVIAFRNNSKQLKDVVFKLEARGMKAAELHGDLGKLARSSTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSTHYAHRAGRTGRLGRDGTVLTICEESEVFIVKKMEKQLGVTVAFCDFVEGKMLVNQEEKALSTSRK* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2763 733 CDD DEADc 309 517 - -
Amo18g2763 733 MobiDBLite consensus disorder prediction 535 554 - -
Amo18g2763 733 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 197 709 - -
Amo18g2763 733 Pfam Helicase conserved C-terminal domain 580 681 IPR001650 -
Amo18g2763 733 SMART ultradead3 317 536 IPR014001 -
Amo18g2763 733 Gene3D - 558 714 IPR027417 -
Amo18g2763 733 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 329 516 IPR014001 -
Amo18g2763 733 Gene3D - 272 518 IPR027417 -
Amo18g2763 733 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 693 IPR027417 -
Amo18g2763 733 MobiDBLite consensus disorder prediction 239 272 - -
Amo18g2763 733 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 197 709 - -
Amo18g2763 733 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 298 326 IPR014014 GO:0003724
Amo18g2763 733 Pfam DEAD/DEAH box helicase 322 502 IPR011545 GO:0003676|GO:0005524
Amo18g2763 733 CDD SF2_C_DEAD 561 690 - -
Amo18g2763 733 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 576 720 IPR001650 -
Amo18g2763 733 MobiDBLite consensus disorder prediction 249 263 - -
Amo18g2763 733 SMART helicmild6 600 681 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2763 Amo-Chr18 117480142 117485706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2763 299 703 Eukaryotic Initiation Factors Gene Family AT3G19760 24.228 2.49e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2763 - - aip:107613119 1012.29