Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2736 ATGAAAAAAATGATCTTGCAAACCCAACAACAAGCTCACCAACTTTTCATGTTCTCATCCACTTATAACAAGTCCAACCTTACCTWCAATCACCATGTGCAAATTCACTTCTCCTGCACATTTTCACGAGTGCCATTCATGTCCCTTAGCATGGGAATGGGAAAGCCTTACAAGAGGAGGAATAGGAATCGGAGCAAGTGTTTCTGTTCTTCTACAACCACGCCAGCTCCATTGCCACCAGACCCAGATAAGGAAGTGAAGAAAGTGGGGGAAAAGAGTGATGGTGTGGTTGTAGAGGGTGGGAGTCCCGATCTGCAAACCCTTTTCAGAAGGTTCTGGAAAGTGGCAGCTCCATATTGGTCTTCGGATGACAAAGCTCAGGCTAGGTTGCAGCTTGCAGGTGTCTTTGCTCTCACCTTGGCTACAACTGGAATCAGTGTTGGCTTCAATTTCTTGGGGAGGGACTTCTACAATGCACTTGCCAACAAGGATCAAGAACAATTCACCAAGCAACTGCTTTACTACCTGGGTGGCTTTGCTGGAGGAATCCCGTTTTTTGTGTTGAGAGATTATGCAAGAGAAACTCTTTCCTTGAGATGGAGGTCTTGGATGACAAGCTATTACATGGATCGCTATCTTAAGGACCGGACTTTCTATAAAATTCAGTCTCAGTCAATCATTGATAATCCAGACCAGCGAATTGTTGACGATCTAAGTTCGTTCACTGGGACTGCTCTTTCTTTCTCCTTGACACTCTTCAATGCTGCTGTYGACTTGATCTCATTCAGTAATATCTTATATGGAATCTATCCTCCCCTCTTCGTTGTACTTCTTGTATACTCTGTTGGTGGGACAGCTATTAGTGTTTTCCTTGGGAGGGAATTGGTGACTTTAAACTTCTTGCAAGAGAAAAAAGAAGCAGACTTCCGTTAYGGGCTTGTGAGGGTTCGGGAAAATGCCGAATCGATTGCTTTCTATGGTGGTGAAGATAGCGAARTGCAACTTCTTCTGCAGCGTTTCAAAAGTGCTTTTGAAAATCTGACTAGATTGTTGATTTCTTCTAGAAATCTGGACTTCTTCACCAGTGGCTACCGCTATCTCATTCAAATTCTTCCTGCCGCTGTTGTTGCTCCAATGTATTTCTCTGGAAAGATTGAGTTTGGTGTCATCAATCAATCAGTYTCTGCTTTTAATCATATCCTTGGTGACTTCTCCCTCATTGTGTACCAGTTTCAAGCTATAAGTGCTTTTTCTGCAGTTATTAATCGGCTAGGTGAGTTTGATGATATTTTGGACAGAAGCAGCTCAAAATCTCTGTCTGATACTTTGGAAGACATACATATTACATATAAAGATTTCAGAAGTTCGTCTGCATTGGAATCTAATGGATCGACACCATCAGAAARTTATGAAACATTGCTGGAGATAAACAATTTGACTCTTAAAACTCCAAGTGAATCTACACTTATAAGAGACTTATCAGTGACAATCAAAGAAAAGGATAATTTATTGGTGATGGGACCAAGTGGAAGTGGTAAGACCTCCTTGTTAAGAGCTCTGGCTGGTCTATGGAGAACTGGAACCGGAAAGATCGTGTACTATGTAAAAGGTGGAGAAGAGTCTGAGCGAACGATTTCTTCCGATGCAAATACTCCTTCAATAAATGTTGCTAATGATACATTTGAAGATCATGGAAAATCCGCAAGCAAAAAATCTAGAATTTTTTTCCTTCCTCAAAGACCATATATGGTTTTGGGCTCTCTTCGTCAACAATTGCTTTATCCAATATGGACTGATGACACAGTTTCTACATCAGGAGATACTGAACAAAAAAATGTGCTTCCTTTCTTGACTAAGTTCCCAAACTCGGACATCATAAAAGATAAGCCTATGAAGCCGACAACGAATGAGCTAATAAAGGTCTTAGAGGATGTCCGCCTTGGCTATTTATTGGCTCGATTCAGTTTAGATTCCACATATGAATGGTCTAGTGTTCTTTCTTTGGGAGAGCAGCAACGCCTTGCATTCGCTCGTCTTTTGCTTTCGAGGCCTCAGTTGGTCTTGTTAGATGAATCAACAAGTGCACTTGATGAAGCCAATGAGGCTCATTTGTACCAGCTGATTGGAGCAGCAGACATAACATACATCAGCATCGGCCACCGGTCGACGTTGCGCTATTACCACAGCAAGATCCTAAGCATATCCACAGCGGATTCCGACGATGAACAGTTAAATTGGAGTATTGGACCCACAAGACATGAATCCTCTCTAGAATTTACAAATCAATGA 2289 0.4168 MKKMILQTQQQAHQLFMFSSTYNKSNLTXNHHVQIHFSCTFSRVPFMSLSMGMGKPYKRRNRNRSKCFCSSTTTPAPLPPDPDKEVKKVGEKSDGVVVEGGSPDLQTLFRRFWKVAAPYWSSDDKAQARLQLAGVFALTLATTGISVGFNFLGRDFYNALANKDQEQFTKQLLYYLGGFAGGIPFFVLRDYARETLSLRWRSWMTSYYMDRYLKDRTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSVGGTAISVFLGRELVTLNFLQEKKEADFRYGLVRVRENAESIAFYGGEDSEXQLLLQRFKSAFENLTRLLISSRNLDFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVINRLGEFDDILDRSSSKSLSDTLEDIHITYKDFRSSSALESNGSTPSEXYETLLEINNLTLKTPSESTLIRDLSVTIKEKDNLLVMGPSGSGKTSLLRALAGLWRTGTGKIVYYVKGGEESERTISSDANTPSINVANDTFEDHGKSASKKSRIFFLPQRPYMVLGSLRQQLLYPIWTDDTVSTSGDTEQKNVLPFLTKFPNSDIIKDKPMKPTTNELIKVLEDVRLGYLLARFSLDSTYEWSSVLSLGEQQRLAFARLLLSRPQLVLLDESTSALDEANEAHLYQLIGAADITYISIGHRSTLRYYHSKILSISTADSDDEQLNWSIGPTRHESSLEFTNQ* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2736 762 Pfam ABC transporter transmembrane region 2 125 381 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo18g2736 762 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 133 416 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo18g2736 762 SMART AAA_5 499 732 IPR003593 -
Amo18g2736 762 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 474 761 IPR003439 GO:0005524
Amo18g2736 762 SUPERFAMILY ABC transporter transmembrane region 110 427 IPR036640 GO:0005524|GO:0016021
Amo18g2736 762 CDD ABCD_peroxisomal_ALDP 474 735 - -
Amo18g2736 762 Gene3D - 467 742 IPR027417 -
Amo18g2736 762 Pfam ABC transporter 491 694 IPR003439 GO:0005524
Amo18g2736 762 PANTHER ATP-BINDING CASSETTE SUB-FAMILY D MEMBER 3 91 748 - -
Amo18g2736 762 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 91 748 - -
Amo18g2736 762 ProSitePatterns ABC transporters family signature. 666 680 IPR017871 GO:0005524
Amo18g2736 762 Gene3D ABC transporter type 1, transmembrane domain 103 430 IPR036640 GO:0005524|GO:0016021
Amo18g2736 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 732 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2736 Amo-Chr18 116948375 116959061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2736 53 757 Acyl Lipid Metabolism Gene Families AT1G54350 64.831 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2736 - - lja:Lj3g3v0937780.2 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2736 18 116948375 116959061 Amo18g2736 18 116948375 116959061 ECH