Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2709 ATGGTACTTCAAGATATTAAGGGAGGAAGGATCCAAGCGTCAATCAATAAAGGTTTATTCAAGAAGTGGAGAGGTTTTTTTGAGGAGTTTAAAATGTACACTATGAGTAACTTCATAGTTGTGGACAAGATGGAGAAGATTAAAACAACAAGAAATCGGTGGACTTTGAACTTTTCCCACAGAACAGTTGTTGTTCGTGTGGAAAATCCAAGTTTTCCTCTCGAATCCTTTTGCTTGAAGCCTATCCCAGAGCTCCTTGCTGCCGAAAAGCTTGATGATTCTCAACTATTGGACATAATCTGGGAGGTTGTTGGGAAGGAGGACCCAAGAGATATAATCACAAGCAAAGGAAATGAGACAAAACGTATAGTGGTTGTGATAGCAGACCTAGATAACAACAATCTTGATTGTGTGTTGTTTGGTGACATGGTCGATCACATACTTCCCCATCTTGAAGATGGCAGGGTTGAACCACTAATAGTGGTGTTGCAGTTCTTTAAACCCAGTCGATGGAATGATAAGGTATCGGTTCAAAGCCACTTTGATGTCTCTAAAATACATGTTAATCCTGACATGAAGGAAGTCTCCGGTCATGGTGTGCAATTTGGTGCTGCAGAACTAAAACGAGGAGGTGTCATAGTGAAATCAATAGAGGATGCACTCAATTCAACAGAGGAAGGTCCTATATGGATTGGCGGAACCATTGTCTCTATCAATGCTGGCAACAACGATTGGTTTTACAAATCGTGTAGGAAGTGTCCAAAGAAAGTAGAAACCCCGATTGGAAATCGATATGAATGTTTCAAGTGTGGTCATACACATGGCAGTGCATCCCTTAGGTACAAGGTTGAAGTTATAGCCTATGATGGAACAGGAAGTATAACTATGCTAATGTGGGATAGAGAAACAACACAGCTTATAGGGAGGCAAGCTGAACAAATCAAGGATGAAGATTGTTTGGAAGGGGAAGGTTACCCCCCAACCCTTGATAACATGATGGACAAGAAGTTACTCTTTAAAATTAATGTCAAAACAGCCAACATCAACAAGCATGACCAGGTTTACACTATCATGAAGATATGTGACGATGAAGACATTATAGAAAAAAATTGCCCTATGGAATTCATCAGCAATCCTTCTGACTTCTTAACTGAGAATGAGATCAGCAATTCAATGGATGTTTCAGTTGCTGTGGCTAATCTCAAGTCTGATAATAATTCTCAGTGCTCTGTGGATGTTGTGGAGGATTCTGTCACAAGCCTCAAGTGCAAGACCCCAACTAGGAGAGCTCTCAATGGGGTAAAACATGCAGTGTCATTGAACATTGACAATGAAAAATATTTCCAACTCTCCACTAACAAGTTAAGCCAAAAGAGTAGCCAGAAGAGGCAAAAGATGCAGACTGTTGAATGTGATAATTAA 1422 0.4023 MVLQDIKGGRIQASINKGLFKKWRGFFEEFKMYTMSNFIVVDKMEKIKTTRNRWTLNFSHRTVVVRVENPSFPLESFCLKPIPELLAAEKLDDSQLLDIIWEVVGKEDPRDIITSKGNETKRIVVVIADLDNNNLDCVLFGDMVDHILPHLEDGRVEPLIVVLQFFKPSRWNDKVSVQSHFDVSKIHVNPDMKEVSGHGVQFGAAELKRGGVIVKSIEDALNSTEEGPIWIGGTIVSINAGNNDWFYKSCRKCPKKVETPIGNRYECFKCGHTHGSASLRYKVEVIAYDGTGSITMLMWDRETTQLIGRQAEQIKDEDCLEGEGYPPTLDNMMDKKLLFKINVKTANINKHDQVYTIMKICDDEDIIEKNCPMEFISNPSDFLTENEISNSMDVSVAVANLKSDNNSQCSVDVVEDSVTSLKCKTPTRRALNGVKHAVSLNIDNEKYFQLSTNKLSQKSSQKRQKMQTVECDN* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2709 473 PANTHER BNAC01G35430D PROTEIN 1 166 - -
Amo18g2709 473 PANTHER BNAC01G35430D PROTEIN 235 387 - -
Amo18g2709 473 Gene3D - 71 198 IPR012340 -
Amo18g2709 473 Gene3D - 199 370 IPR012340 -
Amo18g2709 473 CDD RPA1_DBD_B_like 113 195 - -
Amo18g2709 473 Pfam Replication factor-A C terminal domain 233 360 IPR013955 -
Amo18g2709 473 PANTHER BNAC07G49340D PROTEIN 4 425 - -
Amo18g2709 473 SUPERFAMILY Nucleic acid-binding proteins 80 195 IPR012340 -
Amo18g2709 473 CDD RPA1_DBD_C 214 360 IPR013955 -
Amo18g2709 473 Gene3D - 1 69 IPR012340 -
Amo18g2709 473 SUPERFAMILY Nucleic acid-binding proteins 224 363 IPR012340 -
Amo18g2709 473 PANTHER REPLICATION FACTOR A 1, RFA1 4 425 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo18g2709 473 PANTHER REPLICATION FACTOR A 1, RFA1 235 387 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo18g2709 473 Pfam Domain of unknown function DUF223 1 68 IPR003871 -
Amo18g2709 473 PANTHER REPLICATION FACTOR A 1, RFA1 1 166 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2709 Amo-Chr18 115245407 115247965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2709 3 349 Core DNA Replication Machinery Family AT5G08020 22.933 6.22e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2709 - - aip:107635133 679.478