Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2702 ATGGCGACGGCGACGGGGGCGGAGGAATCAGAACTCAATACCTATTGGTGCCACGAATGCGACATGAGCGTCGCCCTCTCCTCTTCCCGTTCTTCCCCTCTCATGTGTCCCCACTGCCGCACCCACTTCCTAGAACTCATGGACTCACCTTCCCAAAACGACGCCGTTGCACCACTCTCCTCTCTCTCCCTCTTTGATTCCCCCTTCTTTCACCGTCTAATCCACCACCACCTCGTTTCCAACTCCAATACCAACACCACCGACAGTCCAAACGACGACGTTGCTTTCGAGGACCCACTGTCTTTACTCTCCCCGTCCCTGATTTCCTCCAAAACAGCGTCGTCCAAGTCCTCCGCAACCGCCGTCCCCGTAATTCTTGTCACCTCCGCGTTGCTCTCCCAGCTCGATCCAAACGGTGTCGTTTCGTGCGCGGTGTGCAAGGACGACATTGAAATCGACGAGGAAGCAAAGCAGCTTCCGTGTAACCACCTTTACCACTCCGATTGCATCACGCCGTGGCTCGAACTCCACGATTCGTGCCCGCTCTGCCGGTTCCGACTTTCGGCGGCAGAGGAGGAGGCGGAAGGGGAGGAAGAGGACGGCCTCGATGGTGCTTTGACGTCGAGCGAGATCAGGAGTCAGCTGAGGGCGGCGATGGTGAGGCTTTCGGAGCTAATGGAGGAAGAGGAGGATGATTTCTACGGGTTGAGGACCACTCTGAATCACATTGCCTCAAGGCACGGCTTGATTGGCTCCAATGGTGCATCTGTGGTGAGCGAGGAGGGTGAGGGTGGTGATTCGGAGAATTTTTCCAGAATCGGTGGTGGCAATGGCAGTGAATGA 843 0.567 MATATGAEESELNTYWCHECDMSVALSSSRSSPLMCPHCRTHFLELMDSPSQNDAVAPLSSLSLFDSPFFHRLIHHHLVSNSNTNTTDSPNDDVAFEDPLSLLSPSLISSKTASSKSSATAVPVILVTSALLSQLDPNGVVSCAVCKDDIEIDEEAKQLPCNHLYHSDCITPWLELHDSCPLCRFRLSAAEEEAEGEEEDGLDGALTSSEIRSQLRAAMVRLSELMEEEEDDFYGLRTTLNHIASRHGLIGSNGASVVSEEGEGGDSENFSRIGGGNGSE* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2702 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 201 IPR013083 -
Amo18g2702 280 Coils Coil 212 232 - -
Amo18g2702 280 Pfam Ring finger domain 142 184 IPR001841 -
Amo18g2702 280 Pfam zinc-ribbon 13 47 IPR039525 GO:0061630
Amo18g2702 280 SUPERFAMILY RING/U-box 142 188 - -
Amo18g2702 280 SMART ring_2 143 183 IPR001841 -
Amo18g2702 280 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
Amo18g2702 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 13 250 - -
Amo18g2702 280 MobiDBLite consensus disorder prediction 254 280 - -
Amo18g2702 280 CDD RING-H2_RNF126_like 142 184 - -
Amo18g2702 280 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 13 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2702 Amo-Chr18 114811512 114814428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2702 9 264 C3H Transcription Factor Family AT3G60080 34.551 3.07e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2702 K11982 - gmx:100775530 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2702 18 114811512 114814428 Amo07g1393 07 37789283 37792202 hybridization