Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2686 ATGCAGTTAGTGATGATATATTGTGGGTCTTATGATACCTTAAGGACTTTGATACATTTGAAATGTGGTGGTGCTGATGGGATCACAAAACTGAGCAAAATGACAGAAGTTGTAGCAGAACTCGATTTGAATCAACAGCCTTTGCATGACATAGAAGAGCGAATTAGACGCCTAGAAGGCATAATTTTCGGAGTTAGGCAGCGGCAGAGGTGGTGCCGTAGTGATAGTCCTGTCCGAATGACTACATTCACCGGAGAAGTGTTGGTTGATGGGGTTCAAGATGAAGGCAGACCACAGCTGGAAGAGGTAGAGGCCGGAGATGATGTCAAAGAAAATGGTAATGTGGAAAGCAGCAGTTGTAGGGGCAAAAGGAAGGCATCTGCATATTTGGTTGCTAAGGCGCTGGGGATGGAAACTAACACTGATAAGGCAAAGGGACGCGCAGGAAACTACTTCGATTGTAACATATGCTTGAAAATGGCAAGAGATCCTGTTTTGACTTGCTGTGGTCACTTGTTCTGCTGGCCCTGCTTCTTTCGCTTGTCGTATGCTTATGCAAATGCTAGGGAATGCCCTGTATGTGAAGGAGAGGTCATGATCACATGCATTACTCCAATTTATGGATCTGTAGGAGTCAATGACAGTGATCAGCTAGAATCAGAAGAGAATGGTTGTGAAATTCCTGCTCGACCTTGTGCGCGCAGAGTTAAGGTTAGCAAGGTGAAGTGTTTCAGAAACCGTGGTTTTCCATTAAATAATCCCCGTACTTCAGCTCAAAGTTCAAGTACAGTAATCCAAGGAATCGCCTTACTTTCACCGCCAATCACTCCGCCGCAAAGACCTTTAGAGGGACTTGATTCCTACCTTGGAAGTGACTCTGAAGGAAGCACCTTGCAGCTGAATCATAATGCTGCTTCGAACCATTCAGAGTCACATAATCAAAATGTTATTGCTGCAGCCGCCACATCTTCTGTTACTCCTTTGACTATGAATGATGATGCTATTGCTATTACAGATTCCAGTACACAAATCACCAATAGTAGTGGACAGATTATTTCTTCCGACCATTCATCGTCTAGTCGAATTGATGTAGTTTTAAGATGA 1104 0.4384 MQLVMIYCGSYDTLRTLIHLKCGGADGITKLSKMTEVVAELDLNQQPLHDIEERIRRLEGIIFGVRQRQRWCRSDSPVRMTTFTGEVLVDGVQDEGRPQLEEVEAGDDVKENGNVESSSCRGKRKASAYLVAKALGMETNTDKAKGRAGNYFDCNICLKMARDPVLTCCGHLFCWPCFFRLSYAYANARECPVCEGEVMITCITPIYGSVGVNDSDQLESEENGCEIPARPCARRVKVSKVKCFRNRGFPLNNPRTSAQSSSTVIQGIALLSPPITPPQRPLEGLDSYLGSDSEGSTLQLNHNAASNHSESHNQNVIAAAATSSVTPLTMNDDAIAITDSSTQITNSSGQIISSDHSSSSRIDVVLR* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2686 367 MobiDBLite consensus disorder prediction 345 367 - -
Amo18g2686 367 CDD RING-HC_AtRMA_like 152 196 - -
Amo18g2686 367 SUPERFAMILY RING/U-box 150 200 - -
Amo18g2686 367 MobiDBLite consensus disorder prediction 345 361 - -
Amo18g2686 367 SMART ring_2 154 194 IPR001841 -
Amo18g2686 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 264 IPR013083 -
Amo18g2686 367 Pfam zinc-RING finger domain 154 195 IPR001841 -
Amo18g2686 367 ProSiteProfiles Zinc finger RING-type profile. 154 195 IPR001841 -
Amo18g2686 367 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 42 305 - -
Amo18g2686 367 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 42 305 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2686 Amo-Chr18 114215478 114217157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2686 111 237 C3H Transcription Factor Family AT3G58030 42.520 3.57e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2686 K10666 - gmx:100778919 186.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2686 18 114215478 114217157 Amo07g1366 07 36520548 36522544 hybridization