Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2685 ATGGAGCTTGGATTAAGCTTAGGAGACTCTTCAAGGCCTTTTGTTGGGTTCATGGAAAAGCCTCGTAGTGAAACTTCTTCCAACCAACTTGGATTAGGCTTCACCACCACCACCTTGTCCATTGGACCAATCATCACTACTAAAGGACAAAGGGATCAACAACAAGAACAACAACCACAACAACAGGAACATGAAGATAAAGAAGAAGCAAAATCAAAGGACAACAACAACAACAACCACCCTCATCTTCATCAGCTTGATTTCCTTCCTCAGCTCTCTCTCCCATGGCATCCTTCTGAAAACGGTAGAGTGTCAAAAGGTTTGGACGTAAACGTGCTGCCGCTGACAACCGTGGCGGCGACGGCGGCGGCGGGGGCAGATGATGAGGTTGAGGAAGGGGAGGCGCTGTCATCGTCCCCGAATAGCGCAGCGTCTTCCTTTCAGACGGATCTATGCATATTTGGTGGTGGTGGTGGAAGCGGTGGCGGCGGTGGTAGTTACAGCGGTGGTTCGGGAGGAAACTATTACAACTACGGTGGAAAAAGAGATCACTCTGATGGCGAGGGTTATGATCACCAAAGGGATTCTTCAAGAGCAAGCGACGAAGATGAAAACTGCGGCCGTGGCGGCGGCACAAGGAAGAAACTCAGACTCTCCAAGGAACAATCCGCTTACCTTGAGGAGAGCTTCAAAGAGCACAACACTCTTAATCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCGGCCTCGCCAAGTTGAAGTCTGGTTTCAAAACAGAAGAGCAAGGACAAAGCTGAAGCAAACTGAGGTGGATTGTGAGTATTTGAAGAGGTGCTGTGAGACACTAACAGAAGAGAACAGAAAGCTTCACAAGGAGCTTCAAGAATTGAGGGCTCTAAAGACTTCAAACCCATTCTACATGCAGTTACCGGCAACAACGTTGACCATGTGCCCTTCTTGTGAGCGTGTTGCTACAAATCCTTCTTCAAATAATTCTGCCTCACCAACTCCTCCTTCTAATAATAATTCTAACAATAATAATATTATTATAGTAATAATGACTCAAATTCAAAGGTCATTGGATTCCCTCTTGGGAAACACACGTTTCATCCTTTTGCTCACACCACACAACAGCAACAACATCATCCACATCAGTCCACAGCATCGTGAATCATGA 1185 0.4616 MELGLSLGDSSRPFVGFMEKPRSETSSNQLGLGFTTTTLSIGPIITTKGQRDQQQEQQPQQQEHEDKEEAKSKDNNNNNHPHLHQLDFLPQLSLPWHPSENGRVSKGLDVNVLPLTTVAATAAAGADDEVEEGEALSSSPNSAASSFQTDLCIFGGGGGSGGGGGSYSGGSGGNYYNYGGKRDHSDGEGYDHQRDSSRASDEDENCGRGGGTRKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRKLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNPSSNNSASPTPPSNNNSNNNNIIIVIMTQIQRSLDSLLGNTRFILLLTPHNSNNIIHISPQHRES* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2685 394 Pfam Homeodomain 213 267 IPR001356 GO:0003677
Amo18g2685 394 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 347 - -
Amo18g2685 394 ProSitePatterns 'Homeobox' domain signature. 244 267 IPR017970 GO:0000981|GO:0006355
Amo18g2685 394 MobiDBLite consensus disorder prediction 1 84 - -
Amo18g2685 394 SMART HOX_1 211 273 IPR001356 GO:0003677
Amo18g2685 394 MobiDBLite consensus disorder prediction 21 57 - -
Amo18g2685 394 MobiDBLite consensus disorder prediction 58 80 - -
Amo18g2685 394 PANTHER - 1 347 - -
Amo18g2685 394 MobiDBLite consensus disorder prediction 327 346 - -
Amo18g2685 394 CDD homeodomain 213 270 IPR001356 GO:0003677
Amo18g2685 394 Gene3D - 217 267 - -
Amo18g2685 394 MobiDBLite consensus disorder prediction 184 218 - -
Amo18g2685 394 SMART halz 269 312 IPR003106 GO:0006355|GO:0043565
Amo18g2685 394 Coils Coil 282 305 - -
Amo18g2685 394 Pfam Homeobox associated leucine zipper 269 303 IPR003106 GO:0006355|GO:0043565
Amo18g2685 394 SUPERFAMILY Homeodomain-like 200 270 IPR009057 -
Amo18g2685 394 ProSiteProfiles 'Homeobox' domain profile. 209 269 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2685 Amo-Chr18 114034913 114037934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2685 197 326 Homeobox Transcription Factor Family AT4G37790 74.615 1.09e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo18g2685 Homeodomain 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2685 K09338 - gmx:100778742 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2685 18 114034913 114037934 Amo07g1365 07 36440505 36443845 hybridization