Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2639 ATGGCTCCAATGAGTCTCCCACCTGGTTTTAGGTTTCACCCCACAGATGAAGAGCTCGTTGCTTACTACTTAGAAAGGAAGATAACAGGTCGCTCTATAGAGCTTGACATTATAGCTGAAGTTGATTTATACAAATGTGAACCATGGGATTTGCCAGATAAGTCATTTCTACCAAGCAAGGATATGGAGTGGTATTTCTACAGTCCAAGGGATAGGAAGTATCCAAATGGATCAAGAACGAACAGGGCAACAAGAGGTGGGTACTGGAAAGCGACTGGAAAGGACAGGGCAGTGCAGTCTCAGAAGAAGGCAGTTGGTATGAAGAAGACTTTGGTGTATTACAAAGGAAGAGCTCCACATGGAATTAGAACCAACTGGGTCATGCATGAGTACCGCTTGATTGAATCCCTCCCTGGAACTCCTCACTCCTCTTTCAAGGATTCCTTTTCATTGTGTCGGATTTTCAAAAAGACAATTCAAGTTCAAGACAAATCTAAAGAAGAGAAAGAACATCAAGCATTACTAGAGGAAGATCACTCAAGTGGCATTGAGATTTCAAGAGAAATGGAAGCCATGAATGATAATAATAACAATAATATAACTCTAAATAGTAATGAACAATATCCTAATAATAATAATAATAAACTCCCTAATTGTGATGCTTCATCTTCTGATCTCACTCAAGGAACATGTACACCCACAGAAACCGGTATAGCAGATGATTTTCATGCCCAATTTGCTTGTGATGAAGCAAACAGTAGTGCCGCTAATTCTTACTCAATGGGAATAGCATACCCCTCAAACGTTTTTCAGGACATAGAGATGTCTATGTATGGAAGCATGCATAATTATCAATTCCCACAAACGCCTTTGGTGATGGAAGATTTTCCACAAATAGATTTTGCTGAGACAAAGTTATTGAAGCCAGAGGTGACTGAAGATTGCATGTTCTATGATAGATACGGTAGGGATTGTATGAATGGAACACTAGAAGAAATCATCTCATTGTGTTCCTCTCAAGACAACTCTGTGGCTTTGCCCATGCTAGAATGA 1053 0.3979 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVQSQKKAVGMKKTLVYYKGRAPHGIRTNWVMHEYRLIESLPGTPHSSFKDSFSLCRIFKKTIQVQDKSKEEKEHQALLEEDHSSGIEISREMEAMNDNNNNNITLNSNEQYPNNNNNKLPNCDASSSDLTQGTCTPTETGIADDFHAQFACDEANSSAANSYSMGIAYPSNVFQDIEMSMYGSMHNYQFPQTPLVMEDFPQIDFAETKLLKPEVTEDCMFYDRYGRDCMNGTLEEIISLCSSQDNSVALPMLE* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2639 350 MobiDBLite consensus disorder prediction 194 228 - -
Amo18g2639 350 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Amo18g2639 350 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Amo18g2639 350 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Amo18g2639 350 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 306 - -
Amo18g2639 350 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 306 - -
Amo18g2639 350 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2639 Amo-Chr18 110325813 110329904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2639 1 335 NAC Transcription Factor Family AT1G54330 51.488 7.91e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo18g2639 NAM 4.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2639 - - aip:107611200 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2639 18 110325813 110329904 Amo18g2639 18 110325813 110329904 ECH