Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2598 ATGAAGAGCTTCATGACTTATGAAAGCAATGTACTTTTTGCCCTTCGCTTCATGATTGATTGCAATATAGCTGGTGGTAATTGGATTGAAATTCCTGCTGGAAAATATAAGAAGACAGCAAGAAGCTTGTCTAACTGTCAGTTAGAGTTTGATTGCTTCGACATCTCAAGCCTTGAAATAGCAGAATTTCCTATTCTGGGCCGTATCAGGAACAGTAGGGTCCGAGTAAAGGATACAACTTTTTCATCTAGACAATATGGAACCAGAGAAAGTAAAGAAGTTGCTGTAGAAGGGAGAGTTCAGTTTGATCTGCTCCAGCTTCAAAGTGAGGATGAAAATGATGCTGAGCCAAAAACAAAAGTGAGACTCATTGTTCCAAATGGTTCTTGTGGTGGTATAATTGGCAAGGGAGGTGCTACCATTAGGTCATTCATTGAAGAATCTCAGGCTGGAATTAAGATATCTCCTCAGGATAATAATTATTATGGACTGAATGATAGGCTAGTGACACTGACAGGAACTCTCGATGATAACAAATGCTTCAATACTGATGCTCAGACTTTACTTGAAAAGGAAGAAGAAAATACTAATTCTAATATCCTTCCTACAAGTGTTGATAGAACTGAAGTATCGCCATCACAAGGTGAGTATGAAGATCTTGAAAGGGTGCTATCTCGAGATCTTTCAGGCCTAGATTTGTCTGACCAAAACAATGAAGGAAGTATTGGTATTCTGATTCAATGGTTGCATAACTTGCAAAGTGAGATTGGGATTCTAGCTGATGGCACCTTGGCTCTGAGACAAGTTCTAATTCAGAGGACCTGCTGTGACTGTGTTGATACTTCTGGAATCAGATGTGAAACTTATGCTGTCCTTACTGAACAGGTGAGGGTTCCTACTGGAAGAATTATTTTGGAATTGCCTGCTGGAATGTTGGATGATGACAAGGGTGATTTCGTTGGCACTGCAAGGACGAGGGCGACTGGCATAAAGTTCAAACTTGAAGACATGGTTGATCTCACTGCTTTCTTGGATTCTTCAACATGA 1047 0.4021 MKSFMTYESNVLFALRFMIDCNIAGGNWIEIPAGKYKKTARSLSNCQLEFDCFDISSLEIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVAVEGRVQFDLLQLQSEDENDAEPKTKVRLIVPNGSCGGIIGKGGATIRSFIEESQAGIKISPQDNNYYGLNDRLVTLTGTLDDNKCFNTDAQTLLEKEEENTNSNILPTSVDRTEVSPSQGEYEDLERVLSRDLSGLDLSDQNNEGSIGILIQWLHNLQSEIGILADGTLALRQVLIQRTCCDCVDTSGIRCETYAVLTEQVRVPTGRIILELPAGMLDDDKGDFVGTARTRATGIKFKLEDMVDLTAFLDSST* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2598 348 ProSiteProfiles Type-1 KH domain profile. 118 189 - -
Amo18g2598 348 Gene3D - 45 118 IPR036397 GO:0003676
Amo18g2598 348 Pfam DNA polymerase family B, exonuclease domain 4 52 IPR006133 -
Amo18g2598 348 Pfam KH domain 121 176 IPR004088 GO:0003723
Amo18g2598 348 Gene3D DNA Polymerase, chain B, domain 1 1 42 - -
Amo18g2598 348 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 108 190 - -
Amo18g2598 348 Gene3D K Homology domain, type 1 119 195 IPR036612 GO:0003723
Amo18g2598 348 CDD PCBP_like_KH 121 176 - -
Amo18g2598 348 PANTHER PROTEIN BTR1 108 190 - -
Amo18g2598 348 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 119 178 IPR036612 GO:0003723
Amo18g2598 348 SMART kh_6 117 194 IPR004087 GO:0003676
Amo18g2598 348 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 265 347 - -
Amo18g2598 348 SUPERFAMILY Ribonuclease H-like 4 56 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2598 Amo-Chr18 107081872 107084682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2598 1 135 Core DNA Replication Machinery Family AT5G63960 44.118 1.00e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2598 K14944 K02327 aip:107608125 149.058