Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2571 ATGTGTGCGCATGTATTATCTAATAATAATGATAATGAAATTAGTCATAAAGAAGCTAAGTACTTGTTGAAGTTTAAAGAAGTCGTACACAATCTTTTCTCTAATTGGTTCGACAATGATACTGTTATGTGCGAATGGGTTGGTGTGGTTTGTGGTTACTTTCCAGCCACTAATTCTCGATATCTAGAAAAGATCCAGCTCAATTCAAGGCGGCTCAATAGAACAATCCCTTCAGATATTAACAAGTATGTCGTTAATTTATGCTATCTTGATCTTGGAAACAACTCTTTCAGTGGTCATTTGCCTTCTTTTTTGAATCTCTCTTACCTCCAATCTCTGTACTTGTCCCAGAACAACTTCACCTCTATTCCTCACGATTGCTTCTATGGTTTAGAAAATTTGGAGCTCCTTGACTTGAGTTACAATACCAACCTCTCACCCTTGACCTTTCCCACCAACTTGAATACCAACTCACGCCTTATTGTCATCATACTCGAGAATACAAACCTCATAGGCTCCTTGCCGGATATCTTTGATTCTTTTCCCGTATTGCAAACTTTTTCTCTCTCTGAAAACAACCTCACAAAAGTGTTGCCTAAGTCTTTTTCAAAACTAACCAAGCTAATTAGATTGAAACTCAACCACCCCAAGGATAATAAGTTGTCGGATACAATTCAATTTCTTTCATTTATGCCACAATTGTTTCAAGTGAATCTTGAGGGGAACTCCTTCGAGGGTTCTATTCCAGACCTATCTAATTGCAAACACTTGAAATATCTATTCCTTGCAAATAATAGGTTAACAGGTGTAGTTTTACCTTTTCTGGGACTGCTCAATAAAATCTATCAAGTTTCGTTAGAAAACAACTGGTTGCAGGGTCCTCTTCCTTTATTTAATAAAGTTCGGACTCCAAAAGTAAATCTTGCTTCTAATGAATTCTGTTTAGATCATTCTGGACCTTGTGATCACAGAGTCACTACTCTACTCCAAGTTGTTCAGGAATTTCATTATCCATATCTATTGGCGCAATCATGGAGAGGAAACAATCCCTGTGAAACTTGGAATTTCATTACTTGTGATGAGAATGGCAACATCAGAACCGTTAATTTAACAAATTCGAATTTGACGGGGTTAATATCCCCTTCATTCAAAAATTTAATGGATCTATGTCAATTGTATCTTGGTGAAAATAGATTGAATGGGTCCATACCAGAGAGCCTGACAAGCCTACAACAACTCAAGTTTTTGGATGTGTCCAACAACAATTTATCGAAAAATCTTCCACCATTTTCAACAAAGATCATGCCTCACTCATCTAAAACCTCGCTATCTTCTACTTTCATTATAGGTATTTCAATTGCGGGTGTTGGTGTTATTATAATCATCTTTGTTGTGATTGTTTATTATTATAAGAAACATTTATTACAAAATAAAACTTCTATTGATCAGCAAGTTGATAGATTGATAGAAAGTTATGGTACTATAACACTAGTAAGAAGATATACTTATGCAGAAGTAAAACAGATGACAAATTCATTTTGTGAAAAATTGGAAGCAGGAGGATATGGTATTGTATATAAAGGAAGTTTAAATGATGGTCGTCAAGTGGCAGTTGTTATCATCAGTAGAACATCTCATGTGAACATTGTTTCACTTTGGGGATTTTGCTACGAAATGAATAAACAAGCTCTTATTTATGAATTTATGTCCAATGGCTCTTTGGAGAGATATAAATATAAACAGGGACGTTCCTCTCTCAGTTCTCTCTTTTCTATTTTAGATTGGAAAGAACTATATCATATTGTAAGTAGCATTACTCAAGGATTAGACTACTTACATGAAAGATGTAATACAAAAATTTTACATCTTGATATCAAACCTCAAAATGTGCTTTTTGATGAAAAGTTTTGTCCAAAAATTGCAGATTTTGGATTAGCTAAAATATGCAAAAATGATAAAAGTAGTAGGCGAACATTTAGCATAAGAGGAACTCCGGGTTATATTGCACCAGAAATGTTTAGTCGAGCGTATGGTGGAATTTCTTACAAGTCAGATGTGTATGGTTATGGAATGTTAATTCTTGAAATGATGGAGGAAAAAGATGATCCACATATTAGAGGATCTCATGGCAATGAAGATTTTATTTATTACAGGAGTTTGGCTTTCGATAAAGAAGATGAAATTATAATACAAAAGATTTTATTAGTGGGCTTATGTTGTATTCAAATAGATCCATTAAAAAGACCATCAATAAAAGGAGTGGTGAAAATGTTACAAGAAGATCTTAATTTAATATCACGTCCTCAAAAATCTGTCATGTCTTCTTCTCCTACATTCCCTCTTTTATCGTATTCAAGTGCATCTTATAGCGATGTATATAAAACAAATTCGATAATTGAAGAATTAAATGACATAATAAAAAATCTTAAAAGGCAAGAAAGCAAGAAAACCTGCAACACCCCCATTTTCAAGATGCTGGCTGGAACTCCGTTTGGTGCAAGGCTCTTTGCTGAAGAAGGTTCTAGAAGCAATCAGGGAGCTCGTGAACGATGCGAACTTCGATTGCTCTGCGGCTGGGTTCTCACTCCAGGCCATGGACTCGAGCCACGTTGCTCTCGTGGCGGTCCTACTGCGGTCCGAAGGGTTCGAGCACTACGGTGCGACCCAACATCTCGATGGGGATGA 2685 0.359 MCAHVLSNNNDNEISHKEAKYLLKFKEVVHNLFSNWFDNDTVMCEWVGVVCGYFPATNSRYLEKIQLNSRRLNRTIPSDINKYVVNLCYLDLGNNSFSGHLPSFLNLSYLQSLYLSQNNFTSIPHDCFYGLENLELLDLSYNTNLSPLTFPTNLNTNSRLIVIILENTNLIGSLPDIFDSFPVLQTFSLSENNLTKVLPKSFSKLTKLIRLKLNHPKDNKLSDTIQFLSFMPQLFQVNLEGNSFEGSIPDLSNCKHLKYLFLANNRLTGVVLPFLGLLNKIYQVSLENNWLQGPLPLFNKVRTPKVNLASNEFCLDHSGPCDHRVTTLLQVVQEFHYPYLLAQSWRGNNPCETWNFITCDENGNIRTVNLTNSNLTGLISPSFKNLMDLCQLYLGENRLNGSIPESLTSLQQLKFLDVSNNNLSKNLPPFSTKIMPHSSKTSLSSTFIIGISIAGVGVIIIIFVVIVYYYKKHLLQNKTSIDQQVDRLIESYGTITLVRRYTYAEVKQMTNSFCEKLEAGGYGIVYKGSLNDGRQVAVVIISRTSHVNIVSLWGFCYEMNKQALIYEFMSNGSLERYKYKQGRSSLSSLFSILDWKELYHIVSSITQGLDYLHERCNTKILHLDIKPQNVLFDEKFCPKIADFGLAKICKNDKSSRRTFSIRGTPGYIAPEMFSRAYGGISYKSDVYGYGMLILEMMEEKDDPHIRGSHGNEDFIYYRSLAFDKEDEIIIQKILLVGLCCIQIDPLKRPSIKGVVKMLQEDLNLISRPQKSVMSSSPTFPLLSYSSASYSDVYKTNSIIEELNDIIKNLKRQESKKTCNTPIFKMLAGTPFGARLFAEEGSRSNQGARERCELRLLCGWVLTPGHGLEPRCSRGGPTAVRRVRALRCDPTSRWG* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2571 894 SUPERFAMILY L domain-like 345 430 - -
Amo18g2571 894 Coils Coil 799 819 - -
Amo18g2571 894 Gene3D Phosphorylase Kinase; domain 1 485 541 - -
Amo18g2571 894 Gene3D Phosphorylase Kinase; domain 1 542 569 - -
Amo18g2571 894 ProSiteProfiles Leucine-rich repeat profile. 109 130 IPR001611 GO:0005515
Amo18g2571 894 SMART LRR_typ_2 131 152 IPR003591 -
Amo18g2571 894 SMART LRR_typ_2 410 434 IPR003591 -
Amo18g2571 894 SMART LRR_typ_2 107 130 IPR003591 -
Amo18g2571 894 SMART LRR_typ_2 181 204 IPR003591 -
Amo18g2571 894 PANTHER OSJNBA0070M12.3 PROTEIN 13 758 - -
Amo18g2571 894 SUPERFAMILY Protein kinase-like (PK-like) 484 758 IPR011009 -
Amo18g2571 894 Gene3D Transferase(Phosphotransferase) domain 1 570 773 - -
Amo18g2571 894 Gene3D Ribonuclease Inhibitor 323 443 IPR032675 -
Amo18g2571 894 Pfam Leucine rich repeat 364 423 IPR001611 GO:0005515
Amo18g2571 894 Pfam Leucine rich repeat 103 142 IPR001611 GO:0005515
Amo18g2571 894 SUPERFAMILY L domain-like 24 300 - -
Amo18g2571 894 Pfam Protein kinase domain 540 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2571 894 Gene3D Ribonuclease Inhibitor 15 321 IPR032675 -
Amo18g2571 894 PANTHER RECEPTOR-LIKE KINASE TMK4 13 758 - -
Amo18g2571 894 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Amo18g2571 894 SMART serkin_6 511 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2571 894 ProSiteProfiles Protein kinase domain profile. 511 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2571 894 Pfam Leucine rich repeat N-terminal domain 17 51 IPR013210 -
Amo18g2571 894 Pfam Leucine rich repeat N-terminal domain 326 360 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2571 Amo-Chr18 105669112 105673657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2571 440 775 Receptor kinase-like Gene Family AT5G38280 41.892 5.96e-81 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo18g2571 Pkinase 1.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2571 - - ahf:112729553 721.079