Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2554 ATGAATGGTGTCACCCACCTTGAACCAGAACCAGACGATCCTTCTGAGTTTGTTGAAGTTGATCCAACTGGAAGATACGGAAGATACAATGAAATCCTCGGCAAAGGAGCTTCAAAGACAGTATATAGAGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTTTATGATTTCCTGCAAAGTCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTCTTGAAGACATTGAAGCACAAGAACATTATGAAATTCTACACATCTTGGGTAGACACTGCCAATAGGAACATCAATTTTGTCACTGAATTGTTCACTTCTGGTACTCTCAGACAGTATAGACTAAAGCACAAGAGAGTGCATATCAGAGCAGTGAAGCATTGGTGCAGACAGATCTTGAGAGGGCTTCTCTATCTTCATAGCCATGATCCACCTGTGATCCATAGAGATCTCAAATGTGACAATATTTTTATCAATGGAAACCAAGGGGAGGTGAAGATTGGAGATCTTGGCCTGGCTGCGATTCTCCGGAAATCTCATGCTGCTCATTGTGTAGGAACGCCCGAGTTCATGGCCCCTGAAGTTTACGAAGAGGCATATAATGAATTGGTCGACATATATTCATTTGGTATGTGCATATTAGAGATGGTTACCTTTGAATATCCTTATAGTGAATGCACTCATCCAGCGCAAATCTACAAGAAAGTTATTTCCGGTAAAAAGCCGGATGCTTTGTACAAAGTGAAGGATCCAGAAGTGCGAGAATTTGTTGAGAAATGCTTGGCAACTGTTTCTTTAAGGCTATCTGCAAGGGAGCTTCTAGATGACCCGTTTCTTCGAGTTGATGATTATGATTATGATTTGAGACCTGTAGACGGTGGGGAATTGGATGACTTAGGCCCTCTCATTAGGCAGCCACTATTTGATCTTCATCGAAGCTATAGCAACATTAGTAACGAATACTCGAATGGTTTTGGGTATGAAGGAGACTGGTCATCGCATCCAGCTGAGATTGAACCTAATGGAATAGAACTTTTTGAGTACCATGACGATGATGATGAAGAAACGTCTGAAGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGCATATTTTTGAGACTCAGAATCGCAGATAAAGAAGGCCGTATTCGAAATATTTATTTCCCATTCGACATTGAGATGGACACAGCAATTAGTGTGGCAGCAGAAATGGTCGCAGAGCTTGACATTACCGACCAGGATGTTACCAGAATAGCTGATATGATAGATGGCGAAATTGCTTCTTTGGTACCTGATTGGAGGCGTGGACCAGGAATCGATGAATCTCCCCGATTTTCCAATCAGGGTTTATGTCACAATTGTGTCTCGAATCATACCTCCAGCGGATCGCTTCTGGATTTCATTTCGCAGAATCCGGGCAGCAAAAACCCCAAACTTGGCGAGTGTTGTAGGCGTGGATGTACTTCAATGCATGGACGATTCGAGGAGATCACTTTCGAATCTGAGGATTACGACAATCATGTTAGAGAGAATGTACCCAACATATCAAGCCAGTCACACAGCTTACAGTACCAGGGTTTATGGAATCAGCACGAAAGCCGCGAACTCAGTCCGGTAGCGTCCGATCAAAGCCATTCTGACGAACAATACGAACAACTAGACAAATCAATAGCTGCTGAAGATAAAGGGCAGGATCATTGGGAAACCAAGTTTGCCTCCAATGCTGGAAGCTCTCTGCGTAATTTATCAGGAACCCACGATTTCTCTACTATTCGATCGTTATGTTGTGACCTAGAGGGTGACTACGAGGAAGAGATCCAAAAGGAGCTGAGATGGCTCAAAGCGAAATACCAAATGGAGTTAAGGGAACTCAAAGATCAACACCTTGGCCTAATGCCTAAATCTTCTTCTTCCAACAGCAATGACAAAGAGGAAAACAAAACTGAACACCAACTTGTTATGCCGCTGCATTTGCTGACAAAAACTTTGAAAGCAAGCAACAATAACAATGTGATTCATTTGAAACCCTTTACCAATAACTTGAACTGTGATGCCACTACTAACCATCCTCCTCACTGCAACAATAGCATCCCCGATCTGGATGCCCAAAGGGCCCAGAATCGCGAGGCGATGGAATCACTTAGTGAAGAAGAAGGTATGGTTAATGCTAAGAACTTTTTTTCTGGTACATTGCTTCCTCACTCGCTTCATAGAACAGTTTCCCTTCCGGTTGATGCTGTTGATGTATAA 2277 0.4278 MNGVTHLEPEPDDPSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTELFTSGTLRQYRLKHKRVHIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDPEVREFVEKCLATVSLRLSARELLDDPFLRVDDYDYDLRPVDGGELDDLGPLIRQPLFDLHRSYSNISNEYSNGFGYEGDWSSHPAEIEPNGIELFEYHDDDDEETSEDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIYFPFDIEMDTAISVAAEMVAELDITDQDVTRIADMIDGEIASLVPDWRRGPGIDESPRFSNQGLCHNCVSNHTSSGSLLDFISQNPGSKNPKLGECCRRGCTSMHGRFEEITFESEDYDNHVRENVPNISSQSHSLQYQGLWNQHESRELSPVASDQSHSDEQYEQLDKSIAAEDKGQDHWETKFASNAGSSLRNLSGTHDFSTIRSLCCDLEGDYEEEIQKELRWLKAKYQMELRELKDQHLGLMPKSSSSNSNDKEENKTEHQLVMPLHLLTKTLKASNNNNVIHLKPFTNNLNCDATTNHPPHCNNSIPDLDAQRAQNREAMESLSEEEGMVNAKNFFSGTLLPHSLHRTVSLPVDAVDV* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2554 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Amo18g2554 758 SUPERFAMILY Protein kinase-like (PK-like) 30 285 IPR011009 -
Amo18g2554 758 CDD STKc_WNK 25 284 - -
Amo18g2554 758 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 380 434 IPR024678 GO:0004674|GO:0005524
Amo18g2554 758 MobiDBLite consensus disorder prediction 542 561 - -
Amo18g2554 758 Gene3D Transferase(Phosphotransferase) domain 1 110 289 - -
Amo18g2554 758 Gene3D - 377 444 - -
Amo18g2554 758 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2554 758 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Amo18g2554 758 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 747 - -
Amo18g2554 758 SMART serkin_6 27 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2554 758 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 747 - -
Amo18g2554 758 Coils Coil 616 636 - -
Amo18g2554 758 ProSiteProfiles Protein kinase domain profile. 27 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2554 Amo-Chr18 102662576 102666145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2554 12 543 MAP Kinase Kinase Kinase AT3G22420 57.343 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Amo18g2554 Pkinase 4.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2554 K08867 - gmx:100775959 1235.71