Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2548 ATGGCACTGAGTACGTACTTGAATGGAGATGCACTTCAAAATTCATTAATGTCAGATAATTTTACCACCAATTTTCATGAACTAACTGCACCAGAAGAACTTACACTTGACCATTATTACCACCAACACAACCAAGAAGGCTCGTTTCCTAACAACTTTTTCTTTGACCCTTATTTTGACCTTAATAATGAATTTTTCCATACTGAAATTTTGTCTTCTCATCAACTACTTGGTCCTGATTGCACTTCTTCTCATAACTCCTTTATCTCACCCAATGATCTCTTTCAGACTGAATATTCTAATGTTAACACCCTTCTTTCATGTCCCAAACGCCAAAAGTATTTTCATGAGGATGAGGAACTCCAACTCTCTCCTCCACTCAAGGAGTATGCATCGCCCAGTTTATTTGATGGGTTTATACTGAATTCATCTTCCTTATTACCATCAGAAGAAGCAGCATTAGCAGAAGAATTACTATTACCTGCAGCAGTAGCAGCACCGTCATCAGACTTCATGGTTCCTGAAGTTGTACGCAATGGTTTTTGTGTGGGAATTAATAATGAGAGCGAGAAAAAAGATAATGAGAGAACTATTTCTGCACAGAGCATAGCGGCAAGAGAGAGAAGAAGGAGAATCACAGAGAAGACACAAGAACTTGGAAAGTTGGTTCCAGGTGGACCAAAGATGAACACAGCTGAGATGCTCCATGCAGCTTCTAGATATGTGAAGTACCTTCAAACTCAAGTTGGTATGCTTCAACTAATGAACACACTCCAGAAAGAAAATGAGGTTGCTCCTCCAAGTGAAGATCTATGTGCTCTTGTTACTTCTCCCTTTGTTCAAGAGAAGCTTTATTCTGAGGAACTGTGCTTTGTCCCTAAAGACTTTGTTACAACTTTGACAAATCAGCATGATGTTCGATCAAAGCCTACCATCCTTAAGGATCTTAAAGAGTTGATTGAAACAAACAATTTGCAGAAGAAAGCATAG 990 0.3889 MALSTYLNGDALQNSLMSDNFTTNFHELTAPEELTLDHYYHQHNQEGSFPNNFFFDPYFDLNNEFFHTEILSSHQLLGPDCTSSHNSFISPNDLFQTEYSNVNTLLSCPKRQKYFHEDEELQLSPPLKEYASPSLFDGFILNSSSLLPSEEAALAEELLLPAAVAAPSSDFMVPEVVRNGFCVGINNESEKKDNERTISAQSIAARERRRRITEKTQELGKLVPGGPKMNTAEMLHAASRYVKYLQTQVGMLQLMNTLQKENEVAPPSEDLCALVTSPFVQEKLYSEELCFVPKDFVTTLTNQHDVRSKPTILKDLKELIETNNLQKKA* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2548 329 Gene3D - 193 265 IPR036638 GO:0046983
Amo18g2548 329 Pfam Helix-loop-helix DNA-binding domain 202 246 IPR011598 GO:0046983
Amo18g2548 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Amo18g2548 329 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 317 - -
Amo18g2548 329 SMART finulus 202 251 IPR011598 GO:0046983
Amo18g2548 329 Coils Coil 313 329 - -
Amo18g2548 329 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 1 317 - -
Amo18g2548 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 257 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2548 Amo-Chr18 102052949 102055309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2548 165 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 44.654 7.28e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo18g2548 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2548 - - aip:107610272 517.694