Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo18g2537 | ATGTCTTCTTCGGAGAATATGGCAGAAGAGGAATCAAAACCATTGAACTTCATACCAGAGGTTATACTCAAGAAGCGAAAAAGCAACGAAGCATGGGCTCTTAGGAAAAAGGCTCAATTAGAGCGCTCCAACTTCCAACCTAACAAGAACAAGGACGCTACCATAAAAAAGCCCGAGGATTTTGTTATTCAATATCGCAACATGGAGCTGGACCTTATTAGAATGAAGCGCAGAGTAAAGAGGAAACTTCCACAGCTGAACTCAGACTCCAAGCCCTTAATTGTCATTCGGATTCACGGGAAAAATGATATGCATCCGAAAACAAGAAAGAATTTGTACAGCTTGGGGTTGAGAAGAGTATTCAATGCTGTCTTTTTGAAGCCATCAGATGGAGTGTTAGCCAAGTTGCAGAGGGTGGAACCATTTGTTACCTATGGATACCCAAATCTTAAGAGCATAAAGGAGCTAATCTACAAGAAGGGGCACATGAAAATAGAGAAGCGGAAAGTTCCGTTGACAGATAATAACATTGTTGAGCAGGAATTGGGGAAGTATGGTATTGTATGCATAGAAGACATGGTGCATCAGATATATAATGTTGGTCCACACTTTAAGGAAGTTATCCAACTTATGTGGCCCTTCGATCTCAACAAACCAGTCGGAGGATTGACAGGATCAAAAACCCTTTTCAAGGATGGTGGAGACTCTGGGAATCGGGAGGATGTCATCAACGAATTAATCTCTAAAATGAATTAA | 756 | 0.4114 | MSSSENMAEEESKPLNFIPEVILKKRKSNEAWALRKKAQLERSNFQPNKNKDATIKKPEDFVIQYRNMELDLIRMKRRVKRKLPQLNSDSKPLIVIRIHGKNDMHPKTRKNLYSLGLRRVFNAVFLKPSDGVLAKLQRVEPFVTYGYPNLKSIKELIYKKGHMKIEKRKVPLTDNNIVEQELGKYGIVCIEDMVHQIYNVGPHFKEVIQLMWPFDLNKPVGGLTGSKTLFKDGGDSGNREDVINELISKMN* | 252 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo18g2537 | 251 | TIGRFAM | uL30_euk: 60S ribosomal protein uL30 | 19 | 251 | IPR005998 | GO:0000463|GO:0003735|GO:0022625 | |
| Amo18g2537 | 251 | Gene3D | - | 93 | 197 | IPR036919 | - | |
| Amo18g2537 | 251 | Gene3D | - | 198 | 251 | IPR036919 | - | |
| Amo18g2537 | 251 | PANTHER | 60S RIBOSOMAL PROTEIN L7-1 | 9 | 251 | - | - | |
| Amo18g2537 | 251 | CDD | Ribosomal_L7_archeal_euk | 93 | 251 | IPR035808 | - | |
| Amo18g2537 | 251 | Pfam | Ribosomal L30 N-terminal domain | 18 | 82 | IPR012988 | - | |
| Amo18g2537 | 251 | Pfam | Ribosomal protein L30p/L7e | 93 | 143 | IPR016082 | - | |
| Amo18g2537 | 251 | PANTHER | 60S RIBOSOMAL PROTEIN L7 | 9 | 251 | IPR039699 | - | |
| Amo18g2537 | 251 | SUPERFAMILY | Ribosomal protein L30p/L7e | 94 | 251 | IPR036919 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo18g2537 | Amo-Chr18 | 101224179 | 101226881 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo18g2537 | 7 | 251 | Cytoplasmic Ribosomal Protein Gene Family | AT1G80750 | 54.618 | 1.31e-85 | 253 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo18g2537 | K02937 | - | gmx:100500005 | 377.481 |