Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2526 CAGTTCTCGTCGTTCATCACTGCCGTCGTTTTCTTCTCCGGGCTCTGCAGTGTTGCCGACTTGCCATCATCTTCTCCAGTTTGTGTGAAGCAAAGAAGAAGTAGAATGGCATCGTCATCGTCAAACAACAGCAGCTACGATGTTCCCTGGGTTGAGAAGTACCGACCCTCTAAGGTCTCCGACGTCGTTGGCAACCAAGATGCCGTCTCGCGCCTTCAAGTCATCGCCCGAGACGGCAACATGCCCAATCTCATCCTCTCTGGTCCTCCTGGAACTGGTAAAACCACAAGCATACTAGCACTTGCTCATGAGCTTCTTGGTTCCAATTCCAAGGAAGCCGTTCTTGAGCTCAATGCTTCCGATGACCGTGGAATTGATGTCGTCCGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTTACTCTCCCTCCTGGCCGCCACAAGATTGTTATTCTCGATGAAGCTGATAGTATGACTTCGGGGGCTCAGCAAGCTTTGAGGAGGACAATGGAGATATACTCGAATACTACTCGGTTTGCCCTTGCTTGCAACACTTCCTCTAAGGTTATTGAGCCCATTCAGAGTAGATGTGCCATTGTGCGATTTTCGCGCTTGTCTGATGAGGAGATACTCGGTCGCCTCATGGTTGTGGTTCAAGCTGAGAAGGTTCCCTATGTTCCTGAAGGCCTTGAAGCCATCATTTTCACTGCTGATGGTGATATGAGGCAGGCGTTGAATAACTTACAAGCAACATACAGTGGATTCCAGTTTGTTAACCAACAAAATGTTTTCAAGGTTTGTGACCAGCCGCATCCATTGCATGTGAAAAATATGGTGCGTAATGTTCTCGAAGGGAATTTTGATGAGGCTTGTTTGGGCCTCAAACAACTATATGACTTAGGATACTCCCCCACAGATATCATCACAACAATTTTCCGTATTATAAAAAATTATGATATGGCTGAGTATCTGAAATTGGAATTCATGAAGGAAACTGGATTTGCTCATATGAGAATTTGTGATGGGGTTGGTTCCTATCTTCAAATGTGTGGTCTATTGGCCAAGCTTTCTCTAGTTCGTGAAACAGCTAAAGCTGCATGA 1101 0.4587 QFSSFITAVVFFSGLCSVADLPSSSPVCVKQRRSRMASSSSNNSSYDVPWVEKYRPSKVSDVVGNQDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGSNSKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLSDEEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQQNVFKVCDQPHPLHVKNMVRNVLEGNFDEACLGLKQLYDLGYSPTDIITTIFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQMCGLLAKLSLVRETAKAA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2526 366 Pfam ATPase family associated with various cellular activities (AAA) 84 202 IPR003959 GO:0005524|GO:0016887
Amo18g2526 366 CDD AAA 63 200 - -
Amo18g2526 366 PANTHER REPLICATION FACTOR C SUBUNIT 2 39 364 - -
Amo18g2526 366 Gene3D - 206 269 - -
Amo18g2526 366 SUPERFAMILY post-AAA+ oligomerization domain-like 269 360 IPR008921 GO:0003677|GO:0006260
Amo18g2526 366 Pfam Replication factor C C-terminal domain 270 355 IPR013748 -
Amo18g2526 366 Gene3D - 41 205 IPR027417 -
Amo18g2526 366 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 39 364 - -
Amo18g2526 366 Gene3D - 270 362 - -
Amo18g2526 366 CDD HLD_clamp_RFC 205 267 - -
Amo18g2526 366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 268 IPR027417 -
Amo18g2526 366 SMART AAA_5 80 212 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2526 Amo-Chr18 100654171 100657383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2526 46 365 Core DNA Replication Machinery Family AT1G63160 91.250 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2526 K10755 - gmx:100781364 613.224