Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2426 ATGGCTGTTGCTGAGAATGCTGGGGCCAAAATCGGTTCTTCCAGTCAAAATTTGGACAACAGTGTTGTCTCATCGGACACCACTGAGATGGAGAAATCAAAGGCAAGGTCCGGCGGCGGCGGCGGCGGCGGCGGAGGTGGAGGTGCTGTCAACGGTGGTGGTGGTGATCAGAATCTGAACGGTGTATTCAACCAAGATAGAGGTGCAAACACTGTTGTGTCAGTCCCTAACGGTAATTACAAGGCTCAGGTGGGTCARATTCGAAATGGGTTTGATGGAAACGGTGTCCAGGGTCAACAGATGGTGGTCAACAATGATGGGTATGTTGGGATTAATGCGGTAAGGAATGGGGAGAACTGTGGTGAGAGTTATAAGAGGGAGATGAGGGATTTGGAGGAGCTTYTGTCAAAGTTGAACCCCATGGCTGAGGAGTTTGTGCCGCCGTCGCTCGCCAACAGTCACGGTTACTTGGCTGGTCCTGGTGGTGCTGCTGGTTTTGGATTCGCCAACAATTTTGTGCTCCACAATAATTATGGCAATGCTAATGGCCAGACTAACAGAAGGAGGAAGAATGGCTATAGTCAAGGGAAGCGTAGAGCGAATAATAAGATGGATATGGAGAAAAGGGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAGCTGGTTACCGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTCGTTGACTGCCGCGTATGCGGGGATCCCAATTCTATTCTTCGGTTTGCTTTCATTGAGTTTACGGATGAAGATGGTGCAAGGGCTGCTTTGAGCCTATCTGGAACTATGCTCGGATATTATCCACTTAGAGTGCTACCTTCAAAAACTGCCATTGCACCTGTCAACCCAACATTTTTGCCCAGGTCTGAAGATGAACGAGAGATGTGCTCAAGAACAATCTATTGCACAAATATCGACAAGAAGCTCACTCAAGCAGATGTCAAAAGCTTCTTTGAATCTATATGTGGAGAGGTTCACCGCTTGAGGCTTCTTGGAGATTACCATCATTCAACTCGAATTGCATTCGTTGAGTTTGCACTGGCTGAGAGTGCAATAGCAGCTCTGAGCTGCAGTGGTGTGATTTTGGGTGCACTGCCTATAAGGGTAAGTCCATCGAAGACACCAGTCCGTTCCCGTGCTCCACGCACTGCTATGCACTGA 1203 0.4838 MAVAENAGAKIGSSSQNLDNSVVSSDTTEMEKSKARSGGGGGGGGGGGAVNGGGGDQNLNGVFNQDRGANTVVSVPNGNYKAQVGQIRNGFDGNGVQGQQMVVNNDGYVGINAVRNGENCGESYKREMRDLEELLSKLNPMAEEFVPPSLANSHGYLAGPGGAAGFGFANNFVLHNNYGNANGQTNRRRKNGYSQGKRRANNKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKSFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGALPIRVSPSKTPVRSRAPRTAMH* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2426 400 CDD RRM1_CID8_like 213 292 IPR034823 -
Amo18g2426 400 SMART rrm1_1 216 286 IPR000504 GO:0003723
Amo18g2426 400 SMART rrm1_1 313 384 IPR000504 GO:0003723
Amo18g2426 400 Pfam Ataxin-2 C-terminal region 135 149 IPR009818 -
Amo18g2426 400 MobiDBLite consensus disorder prediction 9 28 - -
Amo18g2426 400 Gene3D - 175 292 IPR012677 -
Amo18g2426 400 Gene3D - 299 395 IPR012677 -
Amo18g2426 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 388 IPR000504 GO:0003723
Amo18g2426 400 SUPERFAMILY RNA-binding domain, RBD 185 291 IPR035979 GO:0003676
Amo18g2426 400 CDD RRM2_CID8_like 308 389 IPR034825 -
Amo18g2426 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 290 IPR000504 GO:0003723
Amo18g2426 400 SUPERFAMILY RNA-binding domain, RBD 303 393 IPR035979 GO:0003676
Amo18g2426 400 MobiDBLite consensus disorder prediction 179 203 - -
Amo18g2426 400 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 400 - -
Amo18g2426 400 MobiDBLite consensus disorder prediction 1 63 - -
Amo18g2426 400 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 400 - -
Amo18g2426 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 376 IPR000504 GO:0003723
Amo18g2426 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 280 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2426 Amo-Chr18 87433147 87437413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2426 214 376 Eukaryotic Initiation Factors Gene Family AT1G34140 25.150 1.37e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2426 - - aip:107622933 753.051