Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2424 ATGTCACAGCCGAGGCAGAACAAGATGTTGATGAATCCAAACACTGCCAAACATGTAATTGGTGACACAACCTATACCAAGATCTTTGTTGGAGGCTTGGCTTGGGAAACAAAAAGAGACACTCTCAAACGTTATTTTGATCAGTTTGGAGAGATCTTAGAAGCTGTTGTCATCACTGACAGAAACTCTGGAAGATCAAAAGGATATGGCTTTGTTACATTCAAGGACCCAAATTCTGCAATAAGGGCTTGTCAGAATCCATATCCTGTGATAGATGGAAGGAGGGCTAATTGTAATCTTGCATCTCTTGGTGCACAAAAAATTGATCCATCATCTATGACAGCTACTAGACAAAAATTCAGTAGCCCTTCTTGGAATACAGCACCAATTCCAGTTCATCAAGGAACATCCACTTGTTATAATCAGCATATTCCACAGTATACATTTCCTTATCCACCCTACAGGTATCCAGGTTACCCACCCCAACAAGAAGTATATGAAATGCAGAATTACTATAATGCATATGGTGGACAACACTTTCCATTTCGTTGGTTACCAGCATATTACCAACCAATTTATGGGCTAAGTAGGCATCAATTTGTTCCAACAACAGCTTATGTGAAAAAGACACAATTCCCTGATATGTCACCTCAGGAGTTCACACCTACTGTTGCTTCATCAGAACCTATTTCAGCTTCTTCATCAATTTCTACCACTGGATTAATAACAGGAACTGTAGACGCAGGAGGAGGAGGAGGAGGAGTACTAGGATCACAACAAGAACAGAAATCATCATCTTGA 801 0.402 MSQPRQNKMLMNPNTAKHVIGDTTYTKIFVGGLAWETKRDTLKRYFDQFGEILEAVVITDRNSGRSKGYGFVTFKDPNSAIRACQNPYPVIDGRRANCNLASLGAQKIDPSSMTATRQKFSSPSWNTAPIPVHQGTSTCYNQHIPQYTFPYPPYRYPGYPPQQEVYEMQNYYNAYGGQHFPFRWLPAYYQPIYGLSRHQFVPTTAYVKKTQFPDMSPQEFTPTVASSEPISASSSISTTGLITGTVDAGGGGGGVLGSQQEQKSSS* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2424 266 SUPERFAMILY RNA-binding domain, RBD 3 106 IPR035979 GO:0003676
Amo18g2424 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 103 IPR000504 GO:0003723
Amo18g2424 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 85 IPR000504 GO:0003723
Amo18g2424 266 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 265 - -
Amo18g2424 266 PANTHER BOULE-RELATED 1 265 IPR037366 GO:0003729
Amo18g2424 266 SMART rrm1_1 27 99 IPR000504 GO:0003723
Amo18g2424 266 CDD RRM_RBM24_RBM38_like 26 101 - -
Amo18g2424 266 MobiDBLite consensus disorder prediction 241 266 - -
Amo18g2424 266 Gene3D - 1 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2424 Amo-Chr18 87390830 87393277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2424 22 102 C2H2 Transcription Factor Family AT2G19380 43.210 2.41e-15 73.6