Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2399 ATGACCGTCGCACCACCCAGCTCGCCTTCATCTAACCCTCACACCCAGCCCTCTTTCTGTCGCACCCTAGTTGTTTCTCAACGGTCTCTCGCACCATCAACGCTGCTCCGTCTACGCACCCAGGAATCGGCGCTGCTCCGTCCACGCACCGTCGTCAGATTCGGAACCTCCATCGGCGAGGAGAAGAGGAAGAGGAAAACCTTAGAGGAGAAGCCCTCCGCCGATTCCGCAATCGAAGCTTCGGAGAAGAAGAGGAACTACCACGAGTGCGGCCACCGTAGCTTTCACCTCCAGAAGAGTCGCTGCTCTGCCTGCGGTTCCCCCACTGCACGCAAGATGAATGTTGAGAAGATTGGGGAAGGAACCTACGGCGTCGTTTACAAGGCTCACGACCGCGTTACCAATGAGACCATCGCTCTCAAGAAGATTCGCCTTGAGCAGGAGGATGAAGGCGTTCCTAGCACTGCAATTCGCGAGATTTCTCTCCTCAAGGAAATGCAGCACAGGAATATTTTGTTCAATCATGATAACTGGAGCGTGAAGGCCATCCGTAGAAAGACCACCGGCACTGGCAGGATGAGGTACCTCCGTCACGTTCCTTGCCGATTCAAGAGCGGCTTCAGAGAAGGTACTGAAGCTGCACCAAGGAAGAAGGGAGCAGCTGCATCTGGAGAAACTGTACATGGGAATCGTCATCATCTTGGTCAAGCTCTTCTGGAAGAAACCAGAGTAGCGTTACAAAGTCTGAAATCAAGGGGTATTCGATTCCCTGGCCGTGACAACGGGAGCTTGGCACCTATTTTCACTCCTCTGCGTTTGGTGTCTGAGGCTGAACTTGATCTTCCACACCAGACTCAGCATGATGATATTCCTGTGCAGAGTTTTACTCCTGAACAAACTAAGGAAGCTTTTGATGTTGCTAGAAACAGCATTGAGCTTCTTTCTACTATGTTGTCTTCTTCTCCACAATAA 972 0.5175 MTVAPPSSPSSNPHTQPSFCRTLVVSQRSLAPSTLLRLRTQESALLRPRTVVRFGTSIGEEKRKRKTLEEKPSADSAIEASEKKRNYHECGHRSFHLQKSRCSACGSPTARKMNVEKIGEGTYGVVYKAHDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNILFNHDNWSVKAIRRKTTGTGRMRYLRHVPCRFKSGFREGTEAAPRKKGAAASGETVHGNRHHLGQALLEETRVALQSLKSRGIRFPGRDNGSLAPIFTPLRLVSEAELDLPHQTQHDDIPVQSFTPEQTKEAFDVARNSIELLSTMLSSSPQ* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2399 323 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Amo18g2399 323 MobiDBLite consensus disorder prediction 61 85 - -
Amo18g2399 323 SUPERFAMILY Zn-binding ribosomal proteins 87 113 IPR011332 GO:0006412
Amo18g2399 323 Gene3D Phosphorylase Kinase; domain 1 114 179 - -
Amo18g2399 323 ProSiteProfiles Protein kinase domain profile. 112 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2399 323 SUPERFAMILY GAT-like domain 254 322 - -
Amo18g2399 323 MobiDBLite consensus disorder prediction 209 229 - -
Amo18g2399 323 PANTHER 60S RIBOSOMAL PROTEIN L37 89 112 - -
Amo18g2399 323 SUPERFAMILY Protein kinase-like (PK-like) 115 180 IPR011009 -
Amo18g2399 323 PANTHER 60S RIBOSOMAL PROTEIN L37 176 224 - -
Amo18g2399 323 PANTHER RIBOSOMAL PROTEIN L37 176 224 - -
Amo18g2399 323 Pfam Protein kinase domain 115 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2399 323 PANTHER RIBOSOMAL PROTEIN L37 89 112 - -
Amo18g2399 323 Gene3D - 55 216 IPR011331 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2399 Amo-Chr18 83198453 83200421 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2399 115 172 Core Cell Cycle Gene Families AT3G48750 93.103 3.74e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Amo18g2399 Pkinase 3.6e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2399 K02206 - aip:107624163 163.696