Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2396 GCCCATCCTCAGTCGGATTCTTCCTGCTCGCGGTGGTCTTGTCACCGTCGTCTCGGCGTCATTGTCTCGAAGATTACACAGAAAAAAACCAATTACTTGAAACACTTGCACACAAACATGCCCAGTCCTAACAACAGCTTCCCAATGGATCCTTCATTGGGTCCTTCCCCTGTTCTCAGAACCTTGGTTGTAATCATGATGATTGCACTGCCAAAAGAGAGCTGGAAGATTCATGTCAGAGTAATCAGACTCTGGTCTTTACCAAAATTTAAAGACTCCAAATCCAATAGCTCCATTGAAATGGTGTTGATGGATGAGCAGGGAACAACTATGCATGCTTCTGTAGGTGAGGATCTGATATATGTGTTCCAATCATTGATATTAGATGGAACTGTGTATGTTTTTACATACTTTGGAGTTAGCAACGACTGTCGGTTGTATCGCACAACATCGCATCAATTTCGGTTGTTTTTTCAAGATAGAACTACTGTCTTACCCTCTTTCTGTGATGCAATACCGTTATATGGTATTAAGTTGGTCCCTTTTAGGAAAATTATGGGATACTCTTCTGATCATCTTTTTTTGGTTGACGTTGCTGGAGTTATGACCGGTGTAGAAGGTGAGAGAAAATATGTGAACGATGGCAAACTTATTAACATGATGGTCATTCATATTGAGAATGCCGGATGCGTTTTTTCCAACAACCCTTACTCACCACTTAATATTTTAAAGCTTAATATTGTTGTTCTTGGAGAGATGGTAGACCAGATCAAGGGTTTTCTGGCATCGGGCGATCAACAACTGTCAATAGTTGTTTTTCAATTTGCAAGAGTAAAAAATGCTGGAGGTACCAATATTGTGCAGAACATTATGTATGGTACTAGACTCTTGATAAATCCGGATATTCTCGAGGCTTTGATGCTTCAAAAAAGAGAGATCTCGCAGTACCTATCTGTGATTTCTGGCAAACCGACATATCTTGATGAAGATGAGGTTTTATATTCCACTGGGAGGAAGACAATAAAGGAGTTACGTGCGGTTGCGGATGTTGGATTCTATGTTGTTCGGGCCACTGTTCTTGATGTTGAACCCGTTCCAAGTTGGTGGTATAAATCATGTCTTTGTAGCGTGAAGGCAGAAGCTAATGCGGATGAATACTTCTGCGACGGCTGTAATAGGGACGTGAATAATGTGGTTGACAGGTACAAGTTGAATTTGTTGGTTTTTGATGGTATTGCTACAACGAATTTTGTTGTGTTCGATAAGGAGGTCGCAGCTCTATTCGGACGAACCTGTACTGAGATGGTGAAAGAGTTGAATGAAAAAGGGGAAGCAAGCAAAGATCCTATTGGTTTTAATGAGTTATATTATATTTATGACTCCGTAAATAGAAACTTTTAA 1401 0.4033 AHPQSDSSCSRWSCHRRLGVIVSKITQKKTNYLKHLHTNMPSPNNSFPMDPSLGPSPVLRTLVVIMMIALPKESWKIHVRVIRLWSLPKFKDSKSNSSIEMVLMDEQGTTMHASVGEDLIYVFQSLILDGTVYVFTYFGVSNDCRLYRTTSHQFRLFFQDRTTVLPSFCDAIPLYGIKLVPFRKIMGYSSDHLFLVDVAGVMTGVEGERKYVNDGKLINMMVIHIENAGCVFSNNPYSPLNILKLNIVVLGEMVDQIKGFLASGDQQLSIVVFQFARVKNAGGTNIVQNIMYGTRLLINPDILEALMLQKREISQYLSVISGKPTYLDEDEVLYSTGRKTIKELRAVADVGFYVVRATVLDVEPVPSWWYKSCLCSVKAEANADEYFCDGCNRDVNNVVDRYKLNLLVFDGIATTNFVVFDKEVAALFGRTCTEMVKELNEKGEASKDPIGFNELYYIYDSVNRNF* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2396 466 Gene3D - 331 456 IPR012340 -
Amo18g2396 466 Pfam Replication factor-A C terminal domain 352 444 IPR013955 -
Amo18g2396 466 Gene3D - 60 166 IPR012340 -
Amo18g2396 466 Gene3D - 171 316 IPR012340 -
Amo18g2396 466 CDD RPA1_DBD_C 339 450 IPR013955 -
Amo18g2396 466 Pfam Domain of unknown function DUF223 100 186 IPR003871 -
Amo18g2396 466 SUPERFAMILY Nucleic acid-binding proteins 72 166 IPR012340 -
Amo18g2396 466 SUPERFAMILY Nucleic acid-binding proteins 337 446 IPR012340 -
Amo18g2396 466 CDD RPA1_DBD_A_like 76 164 - -
Amo18g2396 466 PANTHER REPLICATION FACTOR A 1, RFA1 76 434 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo18g2396 466 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 76 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2396 Amo-Chr18 82662127 82669351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2396 74 447 Core DNA Replication Machinery Family AT5G61000 21.212 4.08e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2396 - - ahf:112729129 673.7