Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2362 GCTTCGCTCTTCGCCACCGCCGAAGAGGGGAAAGAGGAGCTGCTCCCTCGCCAGTCATCGTCGTGCTTCCTGGTTGCCGATGAGGGAGCCGCGAGAACCGTTGTAGCTGTTGAGAAATTGAAGTTTTACAGATTCGACGGGGAAAGGAACCGGTGGAAGGAGAGAACCGATGGTGCCGTCAAGTTCCCTAAGAACAAGGTTAAAATTGGGGTTGACAAAAATAGCCGTCCTGTCTTTGCTGATGGAGTTAATCAGCACATGGTTGTACTTATGGCTGCAAGGGCATCAAGGCTAGAGAACCAAGATGCAATTGATTGTGCAATTGTATCTATGTTAGCAGACCCAAAGGAGCTTGCAATTACTAAGGAAACAGGAAGGCATCTTGGAATGGGCTCTAACATGTATCCTTCTTCGTCGCTGCTAGGAGAAAGCAAAGATAATTTTGCTTTTGTTCCCGTCGATGATCTTATAGAGAATGCAGATGGTTTTGCTGGTGTCTTTCCTGAGCACAAATATGAGATTGTGAAGAGGTTACAAGCTAGAAAGCACATTTGTGGGATGACTGGTGATGGAGTGAATGATGCACCAGCTTTGAAGATAGCAGACATAGGTATCGCTGTAGCAGATGCAACAGATGCTGCAAGAAGTGCCTCTGATATAGTTCTAACAGAACCTGGGTTGAGTGTGATCATAAGTGCTGTTTTAACTAGCCGTGCAATTTTCCAAAGAATGAAAAACTACACAATATATGATGTATCTATCACCATCCGTATTGTGGTTGGCTTTATGTTACTCACATGCATTTGGGAATTTAACTTTCCTCCCTTTATGGTTCTTGTCATAGCCATTCTCAACGATGGTATTACTATCTGCTCTCAAATACCATATTTAAAATGCATTATTTGGAGGTCTTCTCTACAGTTATAG 927 0.4358 ASLFATAEEGKEELLPRQSSSCFLVADEGAARTVVAVEKLKFYRFDGERNRWKERTDGAVKFPKNKVKIGVDKNSRPVFADGVNQHMVVLMAARASRLENQDAIDCAIVSMLADPKELAITKETGRHLGMGSNMYPSSSLLGESKDNFAFVPVDDLIENADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYDVSITIRIVVGFMLLTCIWEFNFPPFMVLVIAILNDGITICSQIPYLKCIIWRSSLQL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2362 308 Pfam haloacid dehalogenase-like hydrolase 156 202 - -
Amo18g2362 308 SUPERFAMILY Calcium ATPase, transmembrane domain M 237 288 IPR023298 -
Amo18g2362 308 PANTHER CALCIUM-TRANSPORTING ATPASE 68 117 - -
Amo18g2362 308 PANTHER CALCIUM-TRANSPORTING ATPASE 117 290 - -
Amo18g2362 308 Gene3D - 226 291 - -
Amo18g2362 308 PRINTS H+-transporting ATPase (proton pump) signature 219 244 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo18g2362 308 PRINTS H+-transporting ATPase (proton pump) signature 160 176 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo18g2362 308 PRINTS H+-transporting ATPase (proton pump) signature 188 204 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo18g2362 308 Gene3D - 118 225 IPR023214 -
Amo18g2362 308 SUPERFAMILY HAD-like 137 234 IPR036412 -
Amo18g2362 308 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 163 268 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo18g2362 308 PANTHER PLASMA MEMBRANE ATPASE 68 117 - -
Amo18g2362 308 PANTHER PLASMA MEMBRANE ATPASE 117 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2362 Amo-Chr18 77032799 77038215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2362 117 287 Primary Pumps ATPases AT5G62670 86.628 1.45e-97 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2362 K01535 - aip:110271527 420.239