Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2271 ATGGCGTACAAAGTGGACCATGAATACGACTACCTCTTCAAGGTTGTGTTGATTGGGGACTCTGGGGTTGGAAAATCCAATATCCTTTCCAGGTTTACGCGCAACGAGTTTTGCTTGGAGTCCAAGTCTACCATTGGTGTTGAATTCGCCACCAGAACATTGCAGGTGGAAGGGAAGACTGTAAAGGCACAAATATGGGACACTGCAGGGCAAGAGAGGTATAGAGCCATCACAAGTGCATACTACAGAGGAGCAGTTGGTGCTCTCTTGGTGTATGACATTACCAAGAGGCAAACATTCGACAATGTCCAGCGATGGCTTCGCGAGCTAAGGGACCACGCCGACTCCAACATTGTTATCATGATGGCCGGAAACAAATCCGACCTTAATCATCTGAGAGCAGTGTCTACTGAAGATGCTGAAAGTTTGGCTGAAAAAGAAGGACTATCTTTTCTTGAGACTTCAGCATTGGAAGCCTATAATGTTGAGAAGGCATTCCAAACCATATTGTTTGATATATATCACATTATAAGTAAAAAGGCGCTCGCGGCGCAGGAAGCCACTTCTGCCGGTGTTCCTCAGGGAACCACCATTAATGTCGCGAACACGGCCAATAATGCAGAGAGTTCAAGGTGGAACTACACGTCTCTTACCATAAAAAGCACCAAACCACCCTATCATTACTCCTTTCTAGCAAAGAGTTCTTCACAACTAGAACATTACCCTGCAAGCTTTCACAATCTTCTTCTTCCACCCTATTTGGTGGATCAAAATCATCATGTGCCCCAAGAACCATGCAGTGATGTTAGAAACATTGGTCCTGTGGTTGTTCCTTTTACAGGGTATGCTTCCATATTGAAGAGATCAAGGTTTCTGAAGCCAGCTCAGCAGATTCTTGAAGACATGTGTGGCAGTGTTTTGGATCCTCCACCAAGATTGAATGAAAGTGGTGATGATCATGAAGAAGATCCCATCATTGGAACTAATGGTAGGGATGGAGTTCAGCATCATTGTAGGGATTCTGTACTTGGTTGCATGTTAGATGAGGTATACAAGAAGTATATACTATACTGCCAACAAATGCAATCAGTGGTGTCATCATTTCAGAAAGTAGCTGGGCTTGGAAATGCCACTCCTTACATATCCTTTGGAATCAAATCCATTTCCAAGCATTTTGGATGTTTGAAACATGCTATCTATGATCAACTTCAGTTCACAATGAAGAACACTACTCCTGCATCTAACAATGTTGTTGAAAAGGGTCTTCAATCAGTGCAAAGCTTACACTCAGTTCAACCTGTTTTGAGATCCCAAAGAGGGCTTCCGGATCATGCTGTAGCTTTGTTGAGAAGATGGCTCTTTGAACACTTCTTACACCCTTATCCTACTGATTCTGAAAAGGATACATTGGTTCAACAGACTGGCCTATCAAGATGTCAGGTTTCAAATTGGTTCATCAATGCAAGAGTAAGAATCTGGAAGCCCATGGTGGAAGAGATGCACATGAATGGGTTACAGAAGACTCAAGAATCAGAAGTGATCCATCATGCAAGGAAGCCCACTATTGGCCCTTAA 1575 0.433 MAYKVDHEYDYLFKVVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSTEDAESLAEKEGLSFLETSALEAYNVEKAFQTILFDIYHIISKKALAAQEATSAGVPQGTTINVANTANNAESSRWNYTSLTIKSTKPPYHYSFLAKSSSQLEHYPASFHNLLLPPYLVDQNHHVPQEPCSDVRNIGPVVVPFTGYASILKRSRFLKPAQQILEDMCGSVLDPPPRLNESGDDHEEDPIIGTNGRDGVQHHCRDSVLGCMLDEVYKKYILYCQQMQSVVSSFQKVAGLGNATPYISFGIKSISKHFGCLKHAIYDQLQFTMKNTTPASNNVVEKGLQSVQSLHSVQPVLRSQRGLPDHAVALLRRWLFEHFLHPYPTDSEKDTLVQQTGLSRCQVSNWFINARVRIWKPMVEEMHMNGLQKTQESEVIHHARKPTIGP* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2271 524 Pfam Ras family 14 173 IPR001806 GO:0003924|GO:0005525
Amo18g2271 524 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Amo18g2271 524 Gene3D - 438 515 - -
Amo18g2271 524 ProSiteProfiles 'Homeobox' domain profile. 432 495 IPR001356 GO:0003677
Amo18g2271 524 SMART ran_sub_2 18 217 - -
Amo18g2271 524 Pfam Homeobox KN domain 452 491 IPR008422 GO:0003677|GO:0006355
Amo18g2271 524 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 1 207 - -
Amo18g2271 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 178 IPR027417 -
Amo18g2271 524 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Amo18g2271 524 SMART rab_sub_5 13 176 - -
Amo18g2271 524 SMART HOX_1 435 499 IPR001356 GO:0003677
Amo18g2271 524 ProSiteProfiles small GTPase Ras family profile. 1 249 IPR001806 GO:0003924|GO:0005525
Amo18g2271 524 PANTHER - 1 207 - -
Amo18g2271 524 SMART prehox3 280 401 IPR006563 -
Amo18g2271 524 CDD homeodomain 436 496 IPR001356 GO:0003677
Amo18g2271 524 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Amo18g2271 524 SMART ras_sub_4 10 176 - -
Amo18g2271 524 SUPERFAMILY Homeodomain-like 439 503 IPR009057 -
Amo18g2271 524 Pfam Associated with HOX 285 399 IPR006563 -
Amo18g2271 524 CDD Rab11_like 10 174 - -
Amo18g2271 524 PRINTS Transforming protein P21 ras signature 54 76 - -
Amo18g2271 524 PRINTS Transforming protein P21 ras signature 13 34 - -
Amo18g2271 524 PRINTS Transforming protein P21 ras signature 36 52 - -
Amo18g2271 524 PRINTS Transforming protein P21 ras signature 116 129 - -
Amo18g2271 524 PRINTS Transforming protein P21 ras signature 151 173 - -
Amo18g2271 524 SMART arf_sub_2 1 185 - -
Amo18g2271 524 Gene3D - 5 211 IPR027417 -
Amo18g2271 524 ProSiteProfiles small GTPase Rab1 family profile. 8 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2271 Amo-Chr18 70870621 70876069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2271 270 502 Homeobox Transcription Factor Family AT5G02030 46.154 8.76e-63 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Amo18g2271 Ras 1.6e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2271 K07904 - adu:107457744 625.55