Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2252 ATGTTTGCTCTCTTGTTCTGTTTGAAGCATCCCCCGCGTGTTCAGTCTCGCTGCATCCCGCGAGTGCTGGAGGGCCGCCACGTGCTCGACATCGATGAAACTGGCAGCGGCAAGACCGCCGCTTTCGCCCTCCCAATCCTCCACCGCCTGTCGAAGCACCCGTTCGGTGTGTTCGCATTGGTGGTGACGCCCACTAGGGGACTGGCGTTCCAGCTAGCAGAGCAGTTCTGCTTAACTGAGATAATTAGCAATTCCAAACAGCCATCTGAATGGCATCCAAAGAGCCACTGGTGA 294 0.568 MFALLFCLKHPPRVQSRCIPRVLEGRHVLDIDETGSGKTAAFALPILHRLSKHPFGVFALVVTPTRGLAFQLAEQFCLTEIISNSKQPSEWHPKSHW* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2252 97 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 19 97 IPR014001 -
Amo18g2252 97 PANTHER RNA HELICASE 8 78 - -
Amo18g2252 97 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 8 78 - -
Amo18g2252 97 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 77 IPR027417 -
Amo18g2252 97 Pfam DEAD/DEAH box helicase 13 76 IPR011545 GO:0003676|GO:0005524
Amo18g2252 97 Gene3D - 5 86 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2252 Amo-Chr18 69851994 69852287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2252 8 76 Eukaryotic Initiation Factors Gene Family AT5G11200 40.580 9.33e-12 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2252 K14778 - gmx:100798597 120.938