Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2229 ATGGCATCATCAGTGATGGCTTCAGTGAGCTTAAAACCTGCACCTTTCACTGCTGAGAGGTCCTCAGTTAGAGGGATCCCATCCCTTTCAAGGGCACCCTCTTCCTTCAAAGTCGTGGCCAGTGGTGGAAAGAAAATCAAGACTGATAAGCCTTATGGAATTAATGGAGGCATGAACTTGAGGGATGGACTTGATGCATCTGGCAGGAAAGGAAAGGGAAAGGGTGTGTACCAGTTTGTGGACAAGTACGGTGCTAATGTCGATGGTTACAGTCCTATCTACGATCAAAAGGATTGGTCTCCCACTGGTGATGTCTACACTGGCGGTACGACTGGCTTGGCTATCTGGGCTGTGACTCTTGTTGGCCTTCTTGCTGGTGGTGCACTTCTTGTCTACAACACAAGTGCTTTGTCACAATAG 420 0.4833 MASSVMASVSLKPAPFTAERSSVRGIPSLSRAPSSFKVVASGGKKIKTDKPYGINGGMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDQKDWSPTGDVYTGGTTGLAIWAVTLVGLLAGGALLVYNTSALSQ* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2229 139 Pfam Photosystem II 10 kDa polypeptide PsbR 41 138 IPR006814 GO:0009523|GO:0009654|GO:0015979|GO:0042651
Amo18g2229 139 PANTHER PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC 1 139 IPR006814 GO:0009523|GO:0009654|GO:0015979|GO:0042651
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2229 Amo-Chr18 68961375 68963854 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2229 K03541 - gmx:100499745 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2229 18 68961375 68963854 Amo18g2229 18 68961375 68963854 ECH
Amo18g2229 18 68961375 68963854 Amo07g2089 07 64063306 64065824 hybridization