Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2220 ATGACCTGTTTTCCTTTCTTTAGTAAGATCTCATCTTCAGCAAAACAAGAATCGCATCCAGAAACTGATGAAGATTTGTCTGGTCTTCAACATGTTAGACTTTACACATACAAAGAACTAAGAAATGCTACTAAGGATTTTAGTCCAGCCAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTGTATAAGGGACAACTTAAAGATGGAAAACTTACTGCTATAAAAGTTCTTTCGGCGGAATCCAGACAAGGGGTGAAGGAATTCTTGACAGAGATTAATGTGATCTCGGAAATTGAGCATGAAAATTTGGTGAAGTTATATGGTTGTTGTGTGGAAAGAAATAACAGAATATTAGTCTACAATTATCTCGAGAAAAACAGTCTCGCGCAAAGTCTTCTAGGTTCAGGTGATCACACTAGCCTTCTCTTCAATTGGCAAACTCGATGTAAAATAAGCATTGGGGTCGCACGTGGGCTAGCATTTCTTCATGAGGAAGTAAGGCCTCATATTATTCATAGAGATATAAAAGCAAGTAATATTCTACTCGACCGGGATCTTACTCCCAAGATTTCAGATTTCGGTCTTGCAAAGCTTATTCCAGCAAACATGACTCATGTCAGCACGCGTGTAGCAGGAACACTAGGTTATTTGGCACCGGAGTATGCAATAGGCGGGAAGCTGACACGAAAAGCGGACATTTACAGTTTCGGTGTCCTCCTTGTGGAGATAGTGAGTGGAACATGTAACACAAATTCAAGATTACCTATGGAAGAACAATTTCTCCTAGAAAGGGCATGGAATCTGTACGAGCGAAACGAATTGGTTGCACTCGTAGACATATCACTAAACGGAAAATTCGACGCTGAGCAGGCCTGTAGGTTCCTCAAGATTGGCCTTCTTTGCACTCAAGACTCCCCAAGGATCCGGCCTTCGATGTCTTCGGTAGTCAAGATGCTCACCGGAGAAATGACTGTCGACGACAGCAAGATAACAAAACCAGCCTTAATTACTGACATCATGGACCTTAAAGTTAGAAAGAAACAGGAAATTAATAACTCTAATATGAAGACAACATCTACATACAACACAAACACATCTTCACAGGGTAGTGCTACTAGCACCTTGTCATCACCTCCTTCTACTGCTGTAATTACTTCAACCTTCACTGCAAGATAA 1176 0.409 MTCFPFFSKISSSAKQESHPETDEDLSGLQHVRLYTYKELRNATKDFSPANKIGEGGFGSVYKGQLKDGKLTAIKVLSAESRQGVKEFLTEINVISEIEHENLVKLYGCCVERNNRILVYNYLEKNSLAQSLLGSGDHTSLLFNWQTRCKISIGVARGLAFLHEEVRPHIIHRDIKASNILLDRDLTPKISDFGLAKLIPANMTHVSTRVAGTLGYLAPEYAIGGKLTRKADIYSFGVLLVEIVSGTCNTNSRLPMEEQFLLERAWNLYERNELVALVDISLNGKFDAEQACRFLKIGLLCTQDSPRIRPSMSSVVKMLTGEMTVDDSKITKPALITDIMDLKVRKKQEINNSNMKTTSTYNTNTSSQGSATSTLSSPPSTAVITSTFTAR* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2220 391 MobiDBLite consensus disorder prediction 350 391 - -
Amo18g2220 391 Pfam Protein kinase domain 50 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2220 391 MobiDBLite consensus disorder prediction 351 391 - -
Amo18g2220 391 PANTHER - 2 376 - -
Amo18g2220 391 SMART serkin_6 47 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2220 391 CDD STKc_IRAK 53 321 - -
Amo18g2220 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Amo18g2220 391 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 376 - -
Amo18g2220 391 Gene3D Transferase(Phosphotransferase) domain 1 123 335 - -
Amo18g2220 391 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Amo18g2220 391 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Amo18g2220 391 ProSiteProfiles Protein kinase domain profile. 47 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2220 391 SUPERFAMILY Protein kinase-like (PK-like) 24 319 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2220 Amo-Chr18 68468876 68472208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2220 15 384 Receptor kinase-like Gene Family AT1G07650 47.709 2.49e-110 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo18g2220 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2220 - - gmx:100816707 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2220 18 68468876 68472208 Amo07g2091 07 64105769 64109626 hybridization