Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo18g2203 | GATTCCTTAAAGGCCTTGAAAGAAAAGGAAAAAGAGCTTTCTACACCTGAGCCTGAACCAGAGCCAACTACTGAAGTACTTTTCCTATGCAGCTATGAAGGCTGTAGAAAGACATTCATAGATGCTGGTGCTTTGAGGAAGTATTCTCACATCCATGGAGAGCGGCAATTTATTTGCCACTATGAGGGATGTGTAAAGGTAGTAAGCTTGTTACTTAAGATACAAATTTCTGGACAGCTCAAAGCCTTAAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAAAGAGATTTTGTGTGTCCTCATGAAGGTTGTGGTAAG | 321 | 0.4019 | DSLKALKEKEKELSTPEPEPEPTTEVLFLCSYEGCRKTFIDAGALRKYSHIHGERQFICHYEGCVKVVSLLLKIQISGQLKALKLKRHFLIHTGERDFVCPHEGCGK | 107 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo18g2203 | 107 | SUPERFAMILY | beta-beta-alpha zinc fingers | 29 | 53 | IPR036236 | - | |
| Amo18g2203 | 107 | SUPERFAMILY | beta-beta-alpha zinc fingers | 84 | 107 | IPR036236 | - | |
| Amo18g2203 | 107 | PANTHER | TRANSCRIPTION FACTOR YY1-RELATED | 9 | 107 | - | - | |
| Amo18g2203 | 107 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Amo18g2203 | 107 | PANTHER | TRANSCRIPTIONAL REPRESSOR PROTEIN YY | 9 | 107 | - | - | |
| Amo18g2203 | 107 | Gene3D | Classic Zinc Finger | 23 | 107 | - | - | |
| Amo18g2203 | 107 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo18g2203 | Amo-Chr18 | 67048641 | 67049234 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo18g2203 | 1 | 107 | C2H2 Transcription Factor Family | AT4G06634 | 61.682 | 1.19e-31 | 112 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo18g2203 | - | - | jre:109002317 | 145.976 |