Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2196 AGGGATGGAAACTCGTACGGAGTCTCAAAAGCACTGAGTAGGTTGGTGCTACCTGAAGTGGAGGCAAGAGTGTCTGAGAAGAACATCCTCATTCAGATCCACTGTGAAAAACACAAAGGAGTGTTGATGTACATCCTCAAGTTCATTGACAAACTCCATCTCTCTGTTCTTAACACCACTTCCTTGCCTTTTGGAACCTCCATTGTCGACATAACCATCACTGCCAAGGTGATTAATATTTCGTCACCCAATACTCCTGGCTTGCGCATGCTTCAAGGAAGAAAGCAATTGAAGGATCTTGTGAAGAAGGTACAAGCTGCTCGTGATGAAATGCAATGGGGTGACGAGGGTCCACCTCCGTTGCTGGTAAAAATTACTCCAGATTTGTCAAAAGACGACCTTGAAGACATTGCTGCAGTTGCTGTGGCCCTTAATATTAGTCTATACACTTTGATTTTATCAAATACAACCATTTCCAGACCAGATACTGTTAGTAGCAATCCATTAGCTTCAGAAGCTGGTGGGTTGAGTGGGAAGCCTCTTCTTGATCTCTCTACCAATATCTTAAAGCAGATGTATATCTTGACACGGGGCAAGATTCCTTTGATTGGCTGTGGGGGCATTAGCAGTGGTGAGGATGCATACAAGAAAATAAGATCTGGAGCAACTCTTGTTCAACTATATACTGCTTTTGCTTATGGGGGACCTGCACTTATTCCACAAATGAAGGTGGCTGCTCTTGTTCCTAAAGGGGAGCTTGATGGTGAAATGGGGGATGCACACATGGCAATGCAGGCTAGACCTCTCTCTCTCTCTCGGAGTCTTATCCCAAGCCCCACAAAGGTATAA 849 0.4464 RDGNSYGVSKALSRLVLPEVEARVSEKNILIQIHCEKHKGVLMYILKFIDKLHLSVLNTTSLPFGTSIVDITITAKVINISSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGDEGPPPLLVKITPDLSKDDLEDIAAVAVALNISLYTLILSNTTISRPDTVSSNPLASEAGGLSGKPLLDLSTNILKQMYILTRGKIPLIGCGGISSGEDAYKKIRSGATLVQLYTAFAYGGPALIPQMKVAALVPKGELDGEMGDAHMAMQARPLSLSRSLIPSPTKV* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2196 282 ProSitePatterns Dihydroorotate dehydrogenase signature 2. 202 222 IPR001295 GO:0006207|GO:0016627
Amo18g2196 282 Gene3D Aldolase class I 4 255 IPR013785 -
Amo18g2196 282 PANTHER DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED 76 249 - -
Amo18g2196 282 CDD DHOD_2_like 77 243 IPR005719 GO:0004152|GO:0006207|GO:0016020
Amo18g2196 282 Pfam Dihydroorotate dehydrogenase 76 243 IPR005720 GO:0005737|GO:0016627
Amo18g2196 282 PANTHER DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL 76 249 - -
Amo18g2196 282 Coils Coil 90 110 - -
Amo18g2196 282 SUPERFAMILY FMN-linked oxidoreductases 74 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2196 Amo-Chr18 65994298 65998679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2196 11 79 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 43.478 2.41e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2196 K00254 - ahf:112783071 292.352