Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2183 ATGACTTGGAAGGTCCCTGAAGAATATAGTACTAAATTTGATGGATCTTCTATTTTGAAGGAGACTGACATTGGGAGGCACGTGAATCGGTTGCAGAAGCATTCCTCCAATGACGTTCGTAGATTGGTGAAGCTACTTGTGAGACATGTAGTAGCATCACTAACTGAAAGATCATTGTGCTTGATCCAGAATCAGAGCCAGTGCTTAGTAGATCTATGTGGCGCATTGCACTGTGACATTGAAATCAATTTTGGGTTGAAAAAATCAAAATGTAATCCTGCTGCTGCTGCAAGAAATAAACATCTGTGCGAGAGCTTAGCAGATAGTTGTTTTCCTGTTAATGACGGTTCTGCAGCAAGCCGACTCCATGTTTGTCAGAATTCTTCTTGCAACAATTCTGTGATGCACACAGCTGCACTGGAAGCAGGAAACCTTTCTCCAGAGGCCGCCGGAGTGAATTTTCAAAGACTCCTTAATGCCTTGTCCAACTATGTGGTGAAAATGAATCTATTTAATGTAATTCGTTTGAATTCATTTAACTGGTTCTTGATATATGCAGAAGAAGACAAATGCATTCTAGATCGTTGCTTCCATTTTGCTTTTGATGTTGCTGCTACTTTACTATCTCTATATCTACTTTATCAACTTGTGATAAGGCGAGTGCAGTTGGAGGAGAAGAGCGAGAAAGACCGCCAAATCTGCTCCTCATTTTACATGTTTTTTGATGCAGCCCTTTTGGCAAATATGCAAACATTCCCTCCCAGCAATGCAGGAGGAAGAAGAGGACAAGTATATCAACCTATTACAGCTCAAACTGCTGATCTCCAACTTTATGATTGGACTGTATTCCATCTCTACCTAATTCTCTTCCTTTCCTTTGTTTTGCAGAACTACAACACCACCTCTTCCTTTCTCGCTTCTTTGCAAATTCTTCTTCCTTGTCCTTGTTGGAATTGTGTTTTCACTGGCATAAGCTACAACTCTCACACTCTTGGATCAGCTATGAGCAACTTGACTCTGACAATTACTTTTTTGTTGGCTATCATCTTC 1050 0.4057 MTWKVPEEYSTKFDGSSILKETDIGRHVNRLQKHSSNDVRRLVKLLVRHVVASLTERSLCLIQNQSQCLVDLCGALHCDIEINFGLKKSKCNPAAAARNKHLCESLADSCFPVNDGSAASRLHVCQNSSCNNSVMHTAALEAGNLSPEAAGVNFQRLLNALSNYVVKMNLFNVIRLNSFNWFLIYAEEDKCILDRCFHFAFDVAATLLSLYLLYQLVIRRVQLEEKSEKDRQICSSFYMFFDAALLANMQTFPPSNAGGRRGQVYQPITAQTADLQLYDWTVFHLYLILFLSFVLQNYNTTSSFLASLQILLPCPCWNCVFTGISYNSHTLGSAMSNLTLTITFLLAIIF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2183 350 ProSiteProfiles TFIIS N-terminal domain profile. 1 57 IPR017923 -
Amo18g2183 350 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 63 124 - -
Amo18g2183 350 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 48 IPR035441 -
Amo18g2183 350 Pfam TFIIS helical bundle-like domain 18 47 IPR017923 -
Amo18g2183 350 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 8 49 IPR035441 -
Amo18g2183 350 PANTHER ZINC FINGER PROTEIN-RELATED 63 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2183 Amo-Chr18 63137799 63141932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2183 64 123 C2H2 Transcription Factor Family AT5G40710 68.333 1.18e-22 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Amo18g2183 Med26 0.00013 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2183 - - aip:107614350 132.88