Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2163 ATGGACCTCAACACAAAACCGTTGGCAGAGGAGTTGGACGTCGATGAAGCTGGCTTCCACTTGTGTAACGAGGCTGGTCATAGGGAATCAAACAACGATATAGGAGATCTCAGAACAACCGCTGATGAGGGTCCTGTCGGTGAGAATCCTAGGGAGGGTATGTGCTTTGGCACTCTTCTTGAAGCGCGCAATTATTATCATCGTTATGCTGCAAAGATGGGTTTTGTACCAAAAATAAGGAACACAAATTATGAGAAGCACAGCAAGGATAAGATACCTATAAATCAATCCATGCATTGCAATAAAGATGGCCATCGTATATCTCAGAAAAGGGCACCCAAGAGAGCAAAAACAATCACATCTGTAGGCTGCAAAGCACGTTGTTATGTAAGGTTGGACAAGTCCACAGGTCTATGGAAAGTTTCAAAGTTAGAATTGTCTCATACACACCCGCTTAATCCGAAGCCTTCAGCCATCCTGGAGAATAGAGAGCTCTGCCAGCACACGAAAGATCTGATACAGCGTAATGATGAAGTCGATAGACAACCCAACAAGACCTTTCAGGCATCGACCATGGATATGGATAGAAAAATTTCTAGTCTCAATGCCATTCATCAGAGTCTTCTTACCAGCGGGACTACTGAATCAGCCGGAGAACATGGATCTTCATCAGCTACTCCTTCAGATGTCATAATTAAAGATGAGACCCCATTCCCGGTTAATAATCAAACTCCTTCCGATGTCATAATTAAAGACAAGTCCCCAATCCCGGTTAATATTCAAAATATTCCTGAAGAGCCATCGCCATCACCACTTCATTCTCTTCCAGAAAAGAATAGAAAGAAAGGCAAAGATACTGAGGCAGGTTGTGCTAGTGAAGTGGTGTCCGACCATGATTTTGGTTTCGTGTTAAAGAATACTTTTGATGCAGGTGGTTTTATCGACCAGTACCTTCTGGATTCATCAACTGTGGAGGTGTTGGAAAATATTCCTGCTAATGAGAACATTAGTAGGATGCAGCGAATGCTCCTAAAATCGGCAATCTTATGTCGCGACATGGAGAGGAGCTTTTCCGATTTGGAGAAGTTGAAGGAGAAGCTTGCAGCTAAAGAAAAAGAGATAGCTTTCCTCACTGCCCAAAATATTGAGCTATCCAGTAAAACTATTGAATTGTCTTCTCAAGTGTCAAGGTTAGTAGAGGAGAAAAAGACACTATCTTGTGACCTGAAAGCTTCTGAAAAGAAGGCCTCAGAGTTCAAGAGGAGCTTGGAGATTTCTAGGGACGAAATGGGTATTTTGAAGGATAACTATAAAAAACTTGGTATAGTAGTATTGGAGGGAGTGACTGATGTTGAGAAGAATATCAAGCAGCAAATTCAGTTGTTGGCTCCTAACTTGGATATTTCTAAAGTTGGGGCTTATCGTCATATTGTAAATGGTCAAATTGTTGACCTTCTTAACTAG 1464 0.418 MDLNTKPLAEELDVDEAGFHLCNEAGHRESNNDIGDLRTTADEGPVGENPREGMCFGTLLEARNYYHRYAAKMGFVPKIRNTNYEKHSKDKIPINQSMHCNKDGHRISQKRAPKRAKTITSVGCKARCYVRLDKSTGLWKVSKLELSHTHPLNPKPSAILENRELCQHTKDLIQRNDEVDRQPNKTFQASTMDMDRKISSLNAIHQSLLTSGTTESAGEHGSSSATPSDVIIKDETPFPVNNQTPSDVIIKDKSPIPVNIQNIPEEPSPSPLHSLPEKNRKKGKDTEAGCASEVVSDHDFGFVLKNTFDAGGFIDQYLLDSSTVEVLENIPANENISRMQRMLLKSAILCRDMERSFSDLEKLKEKLAAKEKEIAFLTAQNIELSSKTIELSSQVSRLVEEKKTLSCDLKASEKKASEFKRSLEISRDEMGILKDNYKKLGIVVLEGVTDVEKNIKQQIQLLAPNLDISKVGAYRHIVNGQIVDLLN* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2163 487 Coils Coil 350 387 - -
Amo18g2163 487 Coils Coil 395 429 - -
Amo18g2163 487 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 47 273 - -
Amo18g2163 487 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 47 273 - -
Amo18g2163 487 MobiDBLite consensus disorder prediction 275 289 - -
Amo18g2163 487 Pfam FAR1 DNA-binding domain 64 154 IPR004330 -
Amo18g2163 487 MobiDBLite consensus disorder prediction 211 289 - -
Amo18g2163 487 MobiDBLite consensus disorder prediction 211 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2163 Amo-Chr18 61555500 61560453 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo18g2163 FAR1 1e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2163 - - adu:107459405 872.463