Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2096 ATGATAACACCAGGAAGGCGGGCTTTACTCACTCGAAGAAGCCGTACGCTCGCCGTCGTTCTCACCCTCAAGCAGCCAACTCGCTTTCGCCCTTCCCTCAACTCCCCTTTTCTAGCAAAACAGTTATGGAACTGCCCTCCTGAGATAATGGCAAAACTTGCCACTGGTGGATTCTCTGAGGCCAACTTCCTGGCTGAGGGGGGATTTGGATCCGTTCACAGAGGGGTTCTACCGGATGGACAAGTCGTTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGACCTTGAGTTTTGCTCAGAGGTAGAAGTCCTGAGTTGTGCTCAGCACCGAAATATTGTTATGCTGATTGGATTCTGTATAGAGGATAAGAGAAGGCTACTAGTTTACGAGAGACAGCGAGAACCATTAGAATGGGCTGCACGGCAAAAAATTGCCATTGGAGCTGCTTGTGGGTTACGATATCTTCATGAAGAGTGTAAAGTGGGATGCATTATCCACCGTGACATGCGGCCTAACAACATTCTCATAACTCATGATTTTGAACCACTGGTTGGTGATTTTGGATTGGCGAGGTGGCAACCTGATGGAGACACGGGTGTGGAAACCCGAGTAATTGGAACATTCGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATAACTGAGAAAGCTGATGTTTATTCATTTGGGGTGGTATTGGTGGAGCTTGTTACAGGGAGAAAAGCTGTGGATCTCACGCGGCCTAAGGGACAGCAGTGTCTTACTGAGTGGGCACGACCTCTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGCTGGGGAACCAATACTTAGAAAATGAGGTATATTGCATGTTGCATGCTGCATCATTATGCATACGGCGAGATCCTCATTCTAGACCACGCATGTCACAGGTTCTTCGTATAATGGACGGCGACATGGTCATGGACACAAGTTACATTTCAACTCCAAGTTATGATGTGGGAAACCGGAGTGGCCGACTCTGGTCGGAGCCGCTGCAGAGGCAGCACCATTACAGGGGTCCTCTGTTAGAGGAGTCACTTGAATCATTCAGTGGGAAGCTATCTCTTGACAAATAG 1116 0.4812 MITPGRRALLTRRSRTLAVVLTLKQPTRFRPSLNSPFLAKQLWNCPPEIMAKLATGGFSEANFLAEGGFGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNIVMLIGFCIEDKRRLLVYERQREPLEWAARQKIAIGAACGLRYLHEECKVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYAIEELIDPRLGNQYLENEVYCMLHAASLCIRRDPHSRPRMSQVLRIMDGDMVMDTSYISTPSYDVGNRSGRLWSEPLQRQHHYRGPLLEESLESFSGKLSLDK* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2096 371 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 53 369 - -
Amo18g2096 371 ProSitePatterns Tyrosine protein kinases specific active-site signature. 166 178 IPR008266 GO:0004672|GO:0006468
Amo18g2096 371 Pfam Protein kinase domain 62 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2096 371 ProSiteProfiles Protein kinase domain profile. 58 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2096 371 Gene3D Phosphorylase Kinase; domain 1 35 128 - -
Amo18g2096 371 Gene3D Transferase(Phosphotransferase) domain 1 129 326 - -
Amo18g2096 371 PANTHER INACTIVE PROTEIN KINASE SELMODRAFT_444075 53 369 - -
Amo18g2096 371 CDD STKc_IRAK 64 317 - -
Amo18g2096 371 SUPERFAMILY Protein kinase-like (PK-like) 47 324 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2096 Amo-Chr18 55005407 55007960 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2096 55 334 Trihelix Transcription Factor Family AT1G70460 51.155 6.34e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Amo18g2096 Pkinase 6.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2096 - - ahf:112783851 691.804