Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2076 ATGATCATAAAGCGGAACCTGAAATCCCAAATGCCGAGTCTGAAACGGTGCAGACTCAGTGACTCGGTTGGGAAGAACGACGAGTGCTCTGAAACTCGGAAGAAGAGGAAGAAGACCAARAGCAACGGATACTACCCTCTGAACCTCCTCGGTGACGTCGCCGCCGGCGTGATTCCGATGAGTTTACACGGCCTGCTGAGCGCCGCCGGTGTGTCGGAGAAGGGATTCTCCGCTTCGTGGTGCACTGAAGTCTCATGCTCCCCTAGCGGCGAGGTGGATTCGACAAACGAAGGAGGAGGTGGCGGAGTTGGAAACGGTGTCCTTCGTGTCAATAGGAACCGTGCRGGCGGTGAGGTTCAGCGGCCGGCACTGGTTCGAACCTCACGGGGGCGCGTGCAGGTGCTTCCTTCGAGGTTCAACGACTCTGTTATTGATAATTGGAGGAAGGAGAGTAAGAATAACCATGGCAGCTTYCGTGATTGCGATTTCGATGATGAAGAATACGAATGCAAGCATGAGAGGTTAAGSTTCAAGGCACCAAAGAATGGGAGGAAATTGAGGAACGATGAAAAAACASGTCACAAGCATCGAAAGTACRCGGCATTGTGTGATGTTGGAGAGTTAATGAGGGATTGCAAGGATTTTGGTTCGAAGCGGCGTGACAGCGTTTTGGTTGAGGATGAAAATGGGAGGTTTGTGGAGGTGGAAGGAGTTGAGCTAATGGGGAGTAAGAGTGAAGGGCAATATGGTCCAGAAGATTTTTATGCTGGTGATATAGTGTGGGCAAAAGCTGGGAAAAAGGAACCTTTTTGGCCAGCCATTGTGATTGATCCTATGACTCAGGCACCTGAGCTTGTGCTCCGGTCTTGTATAGCTGATGCAGCTTGTGTCATGTTCCTTGGTTATGCTGGGAACCAAAGCCAAAGGGACTATGCATGGGTGAAGCATGGAATGATTTTTCCATTTATGGATTTTGTAGACAGGTTTCAGGGGCAGTCTGAACTTAGTTCCTATGATTCTTCTGATTTCCAAACGGCAATAGAGGAGGCATTCTTAGCAGACCAGGGCTTCACAGAGAAGTTGATAGCTGATATAAATGCAGCAGCCAGTAATGCCGGATTTGATGATACTCTTCTCAGAGCCCTTCATAGGGTCACTGGTTCAAACCAGTATGCAGGGTATCACTTTCTGAATCAGGATTTATTTGATAAGAAAGACACAAGACCCTGTGAAGCCTGTGGATTGCACCTTCCTTTGACAAAGAAATTGAAGGATTTGGCTCTGAATGGCAAATTCCTTTGTAAAACATGTGCTAGGTTAACAAAATCAAATCATTATTGTGGGATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGAAGTTGGGTTCGCTGTGATGGATGTAAAGTGTGGGTGCATGCGGAATGCGGCAAGATTTCTCGAAACCATTTCAAGAATCTTGAGGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATCCTGAAAAACCACAGCCAAGAGTCAAATCGAACAAAAACAATGGGCAGCTAGGAGGGCTTCCAAATAAGGTCACCGTTCTCTGCAATGGCGTGGAAGGCATATATTTTTCAAGCCTTCACTTAGTTGTTTGCAAGTGRGGTTTTTGTGGGACTGAAAAACAYGCACTCAGTGACTGGGAACGACACACAGGTTCTAAATTAAGAAACTGGAAAACAAGTATTAGGGTCAAAGGCTCCATGTTACCACTTGAACAGTGGATGCTGCAATTGGCTGAGGTCCATGCTAATGCTCAAGTTTCTGTCAAACCTAAAAAGCCTTCTCTAAAAGAGAGGAAGCAGAAGTTGCTTGCCTTCTTGCAAGAAAAGTATGAACCTGTTTATGCTAAATGGACGACAGAACGATGTGCTGTTTGCAGATGGGTCGAGGACTGGGACTACAACAAAATTATCATTTGCATCCGATGCCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCAAGACTTCACGTCTTGGGTCTGTAAAGCTTGTGAGACACCTAACATCAAGCGCGAGTGTTGTCTTTGTCCTGTCAAAGGCGGTGCGTTGAAGCCAACCGATATTGACTCATTATGGGTGCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCTTTTCCCAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTGAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCATGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTACCGAATGGAGTTGCATATTTCTGAGAAAAATGGTAAGCAGACAACAAGAATGGTCTCTTATTGTGCTTACCACAGGGCCCCCAATCCTGATACTGTTTTAATCATGCAAACCCCTCTTGGGGTCATTTCAACCAAGAACCTTCTCCAAACTAAGAGAAAAACCGGATCAAGGTTAATTGCTTCAAACAGAGTAAAGCAAGAACATCCTCCCATTGATAACATCGAGAACGAGCCGTTATCTGCCGCTAGGTGTCGTATCTTTCAAAGGACAAATCCAACAATAAAGAGAGCGGCAGAGGAAACCGTTCCGCATAGGGTTGGAGGACATCGCTGTCACGCTTTAGATGCGATACAGAAACTAAATACATACAGAGCAGTAGAGGAACCTCCAACATTTTCTTCCTTTAGAGAACGCCTTCGCCACTTACAGAAAACGGAAAACGAACGAGTTTGCTTTGGTAGATCAGGCATTCATGGATGGGGCCTCTTTGCACGCAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGAGAACAAGTGCGAGGCAGCATTGCAGATTTGAGGGAGGCGCGCTATCGGTCCGAAGGGAAAGATTGCTATCTGTTTAAGATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCCCGGCTAATCAATCATTCTTGTATGCCAAATTGCTACGCAAGGATCATGAGCGTTGGTGACGATGAGAGCCGGATCGTACTCATTGCTAAGACAAACGTATCTACCGGCGACGAGTTAACATATGACTACTTATTTGATCCTGACGAGCCTGATGAATTTAAGGTCCCATGTCTATGTAAAGCTCCAAATTGTCGAAAATTCATGAATTAG 3222 0.451 MIIKRNLKSQMPSLKRCRLSDSVGKNDECSETRKKRKKTKSNGYYPLNLLGDVAAGVIPMSLHGLLSAAGVSEKGFSASWCTEVSCSPSGEVDSTNEGGGGGVGNGVLRVNRNRAGGEVQRPALVRTSRGRVQVLPSRFNDSVIDNWRKESKNNHGSFRDCDFDDEEYECKHERLXFKAPKNGRKLRNDEKTXHKHRKYXALCDVGELMRDCKDFGSKRRDSVLVEDENGRFVEVEGVELMGSKSEGQYGPEDFYAGDIVWAKAGKKEPFWPAIVIDPMTQAPELVLRSCIADAACVMFLGYAGNQSQRDYAWVKHGMIFPFMDFVDRFQGQSELSSYDSSDFQTAIEEAFLADQGFTEKLIADINAAASNAGFDDTLLRALHRVTGSNQYAGYHFLNQDLFDKKDTRPCEACGLHLPLTKKLKDLALNGKFLCKTCARLTKSNHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECGKISRNHFKNLEGTDYYCPTCKAKFDFELSDPEKPQPRVKSNKNNGQLGGLPNKVTVLCNGVEGIYFSSLHLVVCKXGFCGTEKHALSDWERHTGSKLRNWKTSIRVKGSMLPLEQWMLQLAEVHANAQVSVKPKKPSLKERKQKLLAFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICIRCQIAVHQECYGARNVQDFTSWVCKACETPNIKRECCLCPVKGGALKPTDIDSLWVHVTCAWFRPEVSFPSDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHISEKNGKQTTRMVSYCAYHRAPNPDTVLIMQTPLGVISTKNLLQTKRKTGSRLIASNRVKQEHPPIDNIENEPLSAARCRIFQRTNPTIKRAAEETVPHRVGGHRCHALDAIQKLNTYRAVEEPPTFSSFRERLRHLQKTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRGSIADLREARYRSEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVSTGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN* 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2076 1073 CDD PHD_ATX3_4_5_like 641 687 IPR042011 -
Amo18g2076 1073 CDD SET_SETD1-like 918 1069 - -
Amo18g2076 1073 ProSiteProfiles SET domain profile. 931 1048 IPR001214 GO:0005515
Amo18g2076 1073 SMART PHD_3 641 688 IPR001965 -
Amo18g2076 1073 SMART PHD_3 446 498 IPR001965 -
Amo18g2076 1073 SMART PHD_3 752 808 IPR001965 -
Amo18g2076 1073 ProSiteProfiles Post-SET domain profile. 1057 1073 IPR003616 -
Amo18g2076 1073 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 691 810 IPR013083 -
Amo18g2076 1073 SMART PostSET_3 1057 1073 IPR003616 -
Amo18g2076 1073 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1073 IPR025780 -
Amo18g2076 1073 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1073 - -
Amo18g2076 1073 Pfam PHD-zinc-finger like domain 695 807 - -
Amo18g2076 1073 Gene3D - 250 357 - -
Amo18g2076 1073 CDD PHD_TCF19_like 447 497 - -
Amo18g2076 1073 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 633 690 IPR013083 -
Amo18g2076 1073 Pfam PWWP domain 257 350 IPR000313 -
Amo18g2076 1073 ProSiteProfiles Zinc finger PHD-type profile. 639 690 IPR019787 -
Amo18g2076 1073 ProSiteProfiles PWWP domain profile. 256 325 IPR000313 -
Amo18g2076 1073 SUPERFAMILY SET domain 923 1070 IPR046341 -
Amo18g2076 1073 ProSiteProfiles Zinc finger PHD-type profile. 444 500 IPR019787 -
Amo18g2076 1073 ProSiteProfiles Extended PHD (ePHD) domain profile. 693 808 IPR034732 -
Amo18g2076 1073 Pfam PHD-finger 446 499 IPR019787 -
Amo18g2076 1073 SUPERFAMILY FYVE/PHD zinc finger 444 502 IPR011011 -
Amo18g2076 1073 SUPERFAMILY FYVE/PHD zinc finger 640 704 IPR011011 -
Amo18g2076 1073 SMART set_7 931 1054 IPR001214 GO:0005515
Amo18g2076 1073 Gene3D SET domain 826 1073 IPR046341 -
Amo18g2076 1073 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 502 IPR013083 -
Amo18g2076 1073 PANTHER PHD FINGER PROTEINS 1 1073 - -
Amo18g2076 1073 ProSitePatterns Zinc finger PHD-type signature. 642 687 IPR019786 -
Amo18g2076 1073 Pfam SET domain 942 1047 IPR001214 GO:0005515
Amo18g2076 1073 Pfam PHD-finger 654 688 - -
Amo18g2076 1073 CDD ePHD_ATX3_4_5_like 696 807 IPR041955 -
Amo18g2076 1073 SUPERFAMILY Tudor/PWWP/MBT 249 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2076 Amo-Chr18 53125172 53132921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2076 642 807 C2H2 Transcription Factor Family AT3G14740 33.908 4.01e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo18g2076 zf-HC5HC2H_2 1.5e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2076 - - aprc:113853254 1764.59