Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2070 ATGGAGTGTGAAGTGGGAGTTCAAGGTTTGGATCTGCATGCAAAGGTGGCAAAAACGGAAACAGTAGACCCTATTCTTGGTTTTGGAGCCATGAATCATCATCACCACAACAATCATCATCATCATGATGCAGAGATTTATGCAGATGCTGATGATGCAGATAAAGATTTGTGGCTCAACACAACAACAGAACAAGAAGATTTACTTGTTGGGGATGTGAAAACAGATGCATCTATGTTCTACGACCAATTCCCTCCTCTCCCTGATTTCCCATGCATGTCTTCATCATCGTCTTCGTCTTCAACTCCAACACTTCCATTGAAGAATCTAGCATGCTCAACCACCTCGACCACAACGGCTACCGCAGCAACCTCTTCGTCTTCGTCGTCTGCTTCTTCTTGGGCAGTTCTGAAGCCAGAAGCGGAGGATAATAACAACGGAGAGTGGAACTGCAGTAATAAACAGCAACTTTACATGCAACATCATGATCCACTGGACGCAACGGGAGCGTTGTCCTCAACAGCTTCCATGGAGATTTCACAGCCAAAGTTTCCGGATCAAGATGGATTTGACGGTGTTGTTGGTGAGGTTGATTGCATGGATGATGTGATGGACACTTTTGGGTACATGGAGCTTCTAGAAGCCAACGAGTTCTTTGACCCTTCGTCTATCTTCCAAGGCGAAGAGAATCCCTTAGCGGAATTCACACAAGAGGATCAGGTTTTGCCACAGCAAGAAGAACAACAGAAGCAAGAAAAACCTGCAGTAGTTCATAATCAAAATGATCTTGTTGTTCTTAGACCACAGCAAGAAGCAGTAGTGGAAGGTGTTAGTAACAATAATTATGAACAGCTTCTTGGGTTGTGCGAAGCCAGTAACAATAACGATGTAGAGATCCAAGCAGATGCTGGTGGTGGTGGTGCAATTGCGGATGATGAAATGAGTATGGTGTTCCTGGAATGGCTGAAGTCGAACAAGGATAGCGTATCCGCGAGCGATTTGAGGAGCGTGAAGCTTAAGAAATCCACAATAGAGAGTGCTGCTAAGCGATTGGGCGGTGGAAAAGAAGCTATGAAGCAATTGTTGAAGCTGATTCTTGAATGGGTTCAAACCAGCCACCTTCAGAGTAAAAGGCGCAAGGAAAATAATAACGATAACGCAGTGTCAAACCCTTTCACGGAACAGTTTCAAAATCCAATTCATCAAAACCAGAACAACGCAAATGCTTCGAGTTCTTTTGTCATTGAACCAAACACATGTTTCACCCAGCAGCAACCATGGATGGATCAAGCACCTCTAATGGCAGCCGCTCCTCCGCCTCAGTTTCAGCCTCAGCCGCAATTTCAACAACCCATGGTTGGGTATGTTGGCGACCCTTACACAAACGCTGCTTCTGCAAACACCATGAATGGCAGCAATAATTTTCAGGCTGGTAATGAATACCATATGCTGGAATCGGCGAACTCATGGCCTCCTTCTCAATACACTGTTACTGCTTACTATACCCAGCCATTTGGGGACCATTGTTTTCAACCTCCGGCGGCGGGTGGCTTCGGTAACCAGTACCCTTATCAGTTTTTCCATGGACATGGTGATGGATTGATGAGATTAGGACCCTCAGCTACAAAAGAAGCGAGGAAGAAGCGGATGGCGAGGCAGAGAAGGCTTTCCTCTCATTCTAGGCATCATATTAATCTACAGAGTCAGGGTTCTGATCCAAATGCAAGATTGGGTGTTGGTGGTGAAAATTGCACTGGTGTTGTATCTGCAGCTCCGGCTAATTGGGTGTATTGGCCAACTATGGCTGGTGCTGTTGCTTCCGTTGCGCCCGTGGCTCCCGCGGAACCGTCGGCTGTGGTGGATAAACCTGCCATGCAGACACAGAATTATCATCATCAGGGTCGGCTCTCATCTGATAGGAGACAGGGTTGGAAGTCGGAGAAGAACTTACGGTTCCTTTTACAAAAGGTGTTGAAGCAAAGCGATGTTGGAAGTCTGGGAAGAATTGTTCTACCAAAAAAAGAGGCAGAAACACATCTACCAGAACTAGAGGCAAGGGATGGAATCACCATAACAATGGAAGATATTGGCACCTCTCGTGTTTGGAATATGCGCTATAGATACTGGCCAAACAATAAAAGCAGGATGTATTTGCTAGAGAACACAGGTGACTTTGTTAAAGCCAATGGACTCCAAGAGGGAGATTTCATAGTGATATATTCAGATGTGAAGTGTGGAAAATTTATGATAAGAGGAGTTAAAGTAAGGCAACAAGAAGGGGCGAAAGCAGAGGGCAAGAAAACAGGAAAATCTCATAAAAAACAGCATGGGAACAATGCGGTGCCTACAGCTGGTGCACCTTATACGAATGCCACGTCATCATCCAGTCAGCAAGAAAATGAAAAAGAGAGTATATAA 2418 0.4529 MECEVGVQGLDLHAKVAKTETVDPILGFGAMNHHHHNNHHHHDAEIYADADDADKDLWLNTTTEQEDLLVGDVKTDASMFYDQFPPLPDFPCMSSSSSSSSTPTLPLKNLACSTTSTTTATAATSSSSSSASSWAVLKPEAEDNNNGEWNCSNKQQLYMQHHDPLDATGALSSTASMEISQPKFPDQDGFDGVVGEVDCMDDVMDTFGYMELLEANEFFDPSSIFQGEENPLAEFTQEDQVLPQQEEQQKQEKPAVVHNQNDLVVLRPQQEAVVEGVSNNNYEQLLGLCEASNNNDVEIQADAGGGGAIADDEMSMVFLEWLKSNKDSVSASDLRSVKLKKSTIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQSKRRKENNNDNAVSNPFTEQFQNPIHQNQNNANASSSFVIEPNTCFTQQQPWMDQAPLMAAAPPPQFQPQPQFQQPMVGYVGDPYTNAASANTMNGSNNFQAGNEYHMLESANSWPPSQYTVTAYYTQPFGDHCFQPPAAGGFGNQYPYQFFHGHGDGLMRLGPSATKEARKKRMARQRRLSSHSRHHINLQSQGSDPNARLGVGGENCTGVVSAAPANWVYWPTMAGAVASVAPVAPAEPSAVVDKPAMQTQNYHHQGRLSSDRRQGWKSEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGITITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQEGAKAEGKKTGKSHKKQHGNNAVPTAGAPYTNATSSSSQQENEKESI* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2070 805 MobiDBLite consensus disorder prediction 758 805 - -
Amo18g2070 805 Pfam B3 DNA binding domain 655 751 IPR003340 GO:0003677
Amo18g2070 805 MobiDBLite consensus disorder prediction 775 805 - -
Amo18g2070 805 MobiDBLite consensus disorder prediction 553 575 - -
Amo18g2070 805 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 50 803 IPR044800 GO:0003700
Amo18g2070 805 SMART B3_2 654 754 IPR003340 GO:0003677
Amo18g2070 805 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 50 803 - -
Amo18g2070 805 CDD BfiI_C_EcoRII_N_B3 652 753 - -
Amo18g2070 805 ProSiteProfiles B3 DNA-binding domain profile. 654 756 IPR003340 GO:0003677
Amo18g2070 805 MobiDBLite consensus disorder prediction 120 135 - -
Amo18g2070 805 SUPERFAMILY DNA-binding pseudobarrel domain 653 750 IPR015300 -
Amo18g2070 805 Gene3D - 650 770 IPR015300 -
Amo18g2070 805 MobiDBLite consensus disorder prediction 120 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2070 Amo-Chr18 52469880 52476113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2070 43 795 B3 DNA Binding Superfamily AT3G24650 42.640 2.18e-154 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo18g2070 B3 6.8e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2070 - - ahf:112742109 1306.58