Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2024 ATGTCACAATGGAGAGGCATTGCAAAGGAAGCTATGGACCGAACAGCCATAGCAGTGAAGTTCCTCTGTTGCCTTCACATTACGGACACCTACTTCTGTTCCCCAACTCACGTGTATGGGCCTAGTATGCTKCCCACACTCAACATGGTAGGCGACATCGTTTTGGTTGAACACGTGTCTCAGAGGCTTGGGAAGGTTCGGCATGGTGACTTGGTTGTGATTCGGTCACCGTTGGACCCTAAGAGGTGCCTTACCAAAAGGATTATGGGAATGGAAGGGGATACTGTTACTTACTTTGATCCTATGCTTGGTGATGCTACTCGTGTTGCTGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGATAACATCTTTGCATCCCATGATTCACGGCATTTCGGCCCTGTTCCTTATGGCCTTATACAAGGAAAAGTGTTTGGCCACTTGATTGCCTTGGAGTACCGGGTCAATAAAGATGTTTTGAAGAAGTTTCTACTTGATTATAATGTTAGCTTACCAATTGCCATATCCGGGCAAATGTTCATATCTTTTAGAAATATTTCACTCTCTTCTCATGTTCTGAGTGGAGGATTTTCACAAAGAACTAAACTGTGA 615 0.4488 MSQWRGIAKEAMDRTAIAVKFLCCLHITDTYFCSPTHVYGPSMLPTLNMVGDIVLVEHVSQRLGKVRHGDLVVIRSPLDPKRCLTKRIMGMEGDTVTYFDPMLGDATRVAVVPKGHVWIQGDNIFASHDSRHFGPVPYGLIQGKVFGHLIALEYRVNKDVLKKFLLDYNVSLPIAISGQMFISFRNISLSSHVLSGGFSQRTKL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2024 204 CDD S26_SPase_I 34 145 IPR019533 GO:0004252|GO:0006465
Amo18g2024 204 Gene3D Umud Fragment, subunit A 28 164 - -
Amo18g2024 204 PRINTS Bacterial leader peptidase 1 (S26A) family signature 112 131 IPR000223 GO:0006508|GO:0008236|GO:0016020
Amo18g2024 204 PRINTS Bacterial leader peptidase 1 (S26A) family signature 84 96 IPR000223 GO:0006508|GO:0008236|GO:0016020
Amo18g2024 204 PRINTS Bacterial leader peptidase 1 (S26A) family signature 31 47 IPR000223 GO:0006508|GO:0008236|GO:0016020
Amo18g2024 204 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 2 150 - -
Amo18g2024 204 TIGRFAM sigpep_I_bact: signal peptidase I 19 98 IPR000223 GO:0006508|GO:0008236|GO:0016020
Amo18g2024 204 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 2 150 - -
Amo18g2024 204 Pfam Signal peptidase, peptidase S26 17 100 IPR019533 GO:0004252|GO:0006465
Amo18g2024 204 Pfam Signal peptidase, peptidase S26 107 146 IPR019533 GO:0004252|GO:0006465
Amo18g2024 204 SUPERFAMILY LexA/Signal peptidase 30 149 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2024 Amo-Chr18 49420442 49422916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2024 43 153 MADS-box Gene Family AT1G29960 46.429 7.35e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2024 K09647 - zju:107414309 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2024 18 49420442 49422916 Amo18g2024 18 49420442 49422916 ECH