Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2018 ATGAGGAAGTTCCTGGTTATAGCCTTATCTACAACAATATGCTTCATCGCTTTCGTGATATCCAAGATCTTGATCTCTGTTCTTCTCTACAAAAGATGGAAAAGAAAGCACATAATTTATGAAAATGAAGGAAAGATGGTAATCTTTAGATCTTCATTGCTGCAATCTCTTAAATCCGATGCAGTCTTACAGAAGACACGAAAACTGACCAATAAAGACATCATTGGATCTGGTGGCTATGGAGTGGTTTATGAACTAAGACTAAATGAATCTGTAGCCTTCGCCGTGAAGAGGCTGAACCGGGGATCAGAAGAGAGGGACAATGGTTTTGAGCGAGAGTTGGAGGCGATGGCGGACATAAAGCATCGGAATATTGTAACTCTTCATGGATATTACATTGCACCACACTACAATCTTCTTATATATGAGCTAATGCCAAATGGAAGTTTGGATTCCATTTTGCATGGGAGATCAAAGGAGAAGAAGCATTTGGATTGGCCAACAAGATATAGAGTAGCTGTAGGTGCTGCTAGAGGAATATCATATCTTCACCATGATTGCATCCCTCACATTATCCATAGAGATATCAAATCAAGCAACATATTGCTGGATCAAAACATGGGGGCGCGAGTTTCTGACTTCGGATTAGCCACGTTGATGGAGCCGAATAAGACTCATGTTTCGACAATGGTGGCAGGAACCTTTGGATACTTGGCACCTGAATATTTCGATACTGGAAGAGCAACTGTTAAAGGTGATGTTTACAGCTTTGGAGTGGTGTTACTAGAGCTCTTAACTGGGAAGAAACCCAGTGATGAAGCATTTGTAGAAGAAGGAACCAAGCTTGTCACATGGGTGAAAGCTGTTGTTCAGGAGAAGAAAGAAGAATTAGTTCTTGACAGTAGCTTAGGGTCCTGTCCAATGCAAGAGGTAAACAAGGTGTTCAACATTGCAATGAAGTGTCTTGAACCAGACCCCTTGAATAGACCAAACATGGCTGAGGTTGTCAACTTGCTTGAACAAGCAGTATCATGCAAACATGTTACTACAACATTGCCATGTACAATTAATGACATGTCACCCTAA 1086 0.4107 MRKFLVIALSTTICFIAFVISKILISVLLYKRWKRKHIIYENEGKMVIFRSSLLQSLKSDAVLQKTRKLTNKDIIGSGGYGVVYELRLNESVAFAVKRLNRGSEERDNGFERELEAMADIKHRNIVTLHGYYIAPHYNLLIYELMPNGSLDSILHGRSKEKKHLDWPTRYRVAVGAARGISYLHHDCIPHIIHRDIKSSNILLDQNMGARVSDFGLATLMEPNKTHVSTMVAGTFGYLAPEYFDTGRATVKGDVYSFGVVLLELLTGKKPSDEAFVEEGTKLVTWVKAVVQEKKEELVLDSSLGSCPMQEVNKVFNIAMKCLEPDPLNRPNMAEVVNLLEQAVSCKHVTTTLPCTINDMSP* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2018 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Amo18g2018 361 SMART serkin_6 69 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2018 361 ProSiteProfiles Protein kinase domain profile. 69 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2018 361 PANTHER BNAA07G39120D PROTEIN 2 344 - -
Amo18g2018 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Amo18g2018 361 Gene3D Transferase(Phosphotransferase) domain 1 145 352 - -
Amo18g2018 361 Pfam Protein tyrosine and serine/threonine kinase 70 339 IPR001245 GO:0004672|GO:0006468
Amo18g2018 361 SUPERFAMILY Protein kinase-like (PK-like) 54 340 IPR011009 -
Amo18g2018 361 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 344 - -
Amo18g2018 361 Gene3D Phosphorylase Kinase; domain 1 31 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2018 Amo-Chr18 49263532 49266248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2018 3 343 Receptor kinase-like Gene Family AT2G35620 44.798 5.21e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Amo18g2018 PK_Tyr_Ser-Thr 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2018 - - ahf:112703495 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2018 18 49263532 49266248 Amo18g2018 18 49263532 49266248 ECH