Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2012 ATGGGGGTTTGCACTTCAAAGCCTCACAAACCCAACCCTTACGCTTCTCGGGAACCTGAAGCTGAACCTTACGATCCCTCACAYCAAATCCCCAYAACCCCTCTCACTCCCRCCGGTGYCCGGAAAGATGACGTCATCGCCGGTAAACAGTCGCCGTTCTTCCCCTTCTACAGCCCAAGCCCTGCACYCTTCCTCAAGAAGTCTCCGGCGACCGGAGGAGGGAACAAGAGTGCCAGCTCGACGCCGAGGAGGTTTTTCAGGCGACCGTTCCCGCCTCCGTCGCCGGCGAAGCACATAAGGGCTGTGTTGGCTAGACGGCAGGGAAAGAAYGCGGCAACGGCAATACCGGAGGAAGGAGAGGAGGACGGCGGAGGAGGRGCCGCCGATTTGGATAAGAGATTCGGATTCTCGAAGGAGTTCACTAGTAGGCTTGAGGTTGGGGAAGAAGTGGGTCGAGGGCATTTTGGGTATACTTGTTCTGCTAGGTACAAGAAGGGTGAGCTTAAGGGTCAGCAAGTTGCTGTTAAAGTCATCCCAAAAGCTAAGATGACAACAGCAATTGCAATTGAAGATGTGAGAAGGGAGGTTAAGATATTGCGAGCTTTGAACGGACACAAGAATCTGGTACAATACTATGATGCATTTGAAGATCAAGATAATGTCTACATTGTGATGGAGTTATGCGAAGGTGGCGAGCTTTTGGATAGGATACTATCAAAAGGAGGGAAATACTCAGAAGATGATGCGAAGGCTGTGATGGTACAAATACTAAATGTTGTTGCATTTTGTCATCTTCAAGGTGTGGTGCATCGAGATCTTAAGCCAGAGAATTTTCTGTATACGTCGAAGGATGAAAGTTCAGAGTCAGAATTAAAAGCAATTGACTTTGGGTTATCTGACTTTGTCCGACCAGATGAAAGGCTTAATGACATTGTTGGAAGTGCATACTATGTGGCCCCAGAAGTTCTCCATAGATCATACAGCACTGAGGCTGATGTGTGGAGCATAGGCGTGATCGCATATATTCTTTTGTGTGGTAGTCGCCCATTTTGGGCCCGAACGGAGTCTGGTATCTTTAGGGCAGTTTTGAAAGCTGATCCCAGCTTCGATGAGGCTCCTTGGCCTTCTTTATCTACAGAAGCAAAAGATTTTGTCAAACGCCTACTGAATAAGGATCCACGGAAACGAATATCTGCTTCTCAAGCTCTAAGTCACCCTTGGATAAGGAATTACAATAATGTAAAAGTCRCACTTGATCTTTTAATATTTAAGCTCATGAAAATCTATATGCGATCATCATCCTTGCGTAAGGCTGCTTTAAGGGCCTTGTCCAAGACATTAACTGCTGATGAACTCTATTATCTAAGGGAGCAATTTGCATTGTTAGAACCAAGCAAAAATGGCAGCATATCCTTAGAAAACATTAGCAAGGCCTTGATGAAACATGCAACGGATGCCATGAAAGAGTCTCGCATCCCTGACTTTCTTGCCTCGCTAAATCCATTACAATATAGAAGAATGGATTTTGAAGAATTCTGTGCTGCTGCATTAAGCGTACATCAGCTCGAAGCTCTTGATCGCTGGGAACAACATGCCCGATGTGCTTACGAGCTCTTTGAGAAAGATGGAAACAGGGCTATCGTTATTGAAGAACTTGCATCGGAACTTGGGCTCGGTCCTTCTATCCCTGTTCATGTGGTTCTTCATGACTGGATACGGCACACCGATGGAAAGCTAAGCTTTCTTGGCTTTGTCAAATTATTACATGGTGTGTCTAGCAGAAGTCTTGCAAAGGTTCAGTAA 1803 0.4587 MGVCTSKPHKPNPYASREPEAEPYDPSHQIPXTPLTPXGXRKDDVIAGKQSPFFPFYSPSPAXFLKKSPATGGGNKSASSTPRRFFRRPFPPPSPAKHIRAVLARRQGKNAATAIPEEGEEDGGGGAADLDKRFGFSKEFTSRLEVGEEVGRGHFGYTCSARYKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHKNLVQYYDAFEDQDNVYIVMELCEGGELLDRILSKGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTSKDESSESELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSTEAKDFVKRLLNKDPRKRISASQALSHPWIRNYNNVKVXLDLLIFKLMKIYMRSSSLRKAALRALSKTLTADELYYLREQFALLEPSKNGSISLENISKALMKHATDAMKESRIPDFLASLNPLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLAKVQ* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2012 600 Gene3D - 448 517 - -
Amo18g2012 600 PANTHER CDPK-RELATED KINASE 2 39 594 - -
Amo18g2012 600 CDD STKc_CAMK 145 407 - -
Amo18g2012 600 SMART serkin_6 144 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2012 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
Amo18g2012 600 Pfam Protein kinase domain 145 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2012 600 ProSiteProfiles Protein kinase domain profile. 144 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2012 600 Gene3D Phosphorylase Kinase; domain 1 146 233 - -
Amo18g2012 600 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 594 - -
Amo18g2012 600 MobiDBLite consensus disorder prediction 1 128 - -
Amo18g2012 600 Gene3D - 426 587 - -
Amo18g2012 600 SUPERFAMILY Protein kinase-like (PK-like) 140 447 IPR011009 -
Amo18g2012 600 ProSitePatterns Protein kinases ATP-binding region signature. 150 176 IPR017441 GO:0005524
Amo18g2012 600 SUPERFAMILY EF-hand 436 590 IPR011992 -
Amo18g2012 600 Gene3D Transferase(Phosphotransferase) domain 1 234 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2012 Amo-Chr18 48976551 48982067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2012 1 596 EF-hand Containing Proteins AT3G50530 71.969 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Amo18g2012 Pkinase 5.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2012 K00924 - gmx:100798913 1045.42