Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2004 TTTTTTGAACCTAACAAGAATGGAGTGAGATTATTGCCACCTGTATTTCGGTTCCAACCAACAGAAGAGGAGTTTCTATTTCAGTATTTGAAATGTAAGGTTTTCTCTTTTCAGTTGCCAGCTTCAATCAATCCTGAGATCAATGTTTGCAACTACGATCCATGGGATTTGCCAGATAGATACTTGTTCAGCTCAAAGGAAGTTAAGTATAGAAACGGTAACCGAATGAACAGAATAACGAAATCTGGATATTGGAAAGCAACTGGATCAGACAAAAGAATAATTTCAACATCATGCAATAATAATAATAATAGTAATATTGTTGGGATAAGAAAAACTCTTGTATTCTATCATGGAAAATCTCCAAATGGCTCTAGAACTCATTGGATCATGCGTGAGTATCGACTTAAGGCATCCAATCATGATTGTATGCGAGACTCTTTAAACCACAACTGTCTTGCAAAGGACGCGAGCCACTGCAACTCGTTCGAATGA 495 0.3697 FFEPNKNGVRLLPPVFRFQPTEEEFLFQYLKCKVFSFQLPASINPEINVCNYDPWDLPDRYLFSSKEVKYRNGNRMNRITKSGYWKATGSDKRIISTSCNNNNNSNIVGIRKTLVFYHGKSPNGSRTHWIMREYRLKASNHDCMRDSLNHNCLAKDASHCNSFE* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2004 164 Pfam No apical meristem (NAM) protein 13 136 IPR003441 GO:0003677|GO:0006355
Amo18g2004 164 Gene3D NAC domain 21 159 IPR036093 GO:0003677|GO:0006355
Amo18g2004 164 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 143 - -
Amo18g2004 164 SUPERFAMILY NAC domain 10 142 IPR036093 GO:0003677|GO:0006355
Amo18g2004 164 ProSiteProfiles NAC domain profile. 12 164 IPR003441 GO:0003677|GO:0006355
Amo18g2004 164 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 5 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2004 Amo-Chr18 48579646 48582242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2004 6 149 NAC Transcription Factor Family AT5G13180 59.060 5.76e-54 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo18g2004 NAM 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2004 - - gmx:100812015 200.675