Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1967 ATGATTTCTGGAAGATGTGCTGCTTGCAAGAATCAAAGAAGAAAATGCCCTTCTGATTGCATATTTTCTCCATATTTTCCTGCCAATGATCCTCAAAAATTTGCTTGTGTCCACAAAATCTATGGTGGCAGTAATGTTGGAAGAATGCTTCAGGGAATCCCAACCTATCTGAGAGAACAAGCTGCAAATGCATTGTATTTAGAAGCAAAATGGAGGATTGATGACCCTGTTTATGGAAGTGTTGGCATTATCTCTTCATTGTATGAACAAGTTCAAAATGCAGAAATTGAGCTAGCAAAAATTCAAGCTCAGATTGCTTTCTACAAACTCCAAACCCAACATGTTGAAGCTGAACCAAATTCGGAAGTTTTGCAATCACAAAGCATCACTATGGAGCAGTTTGAATCGGACAATCCAACTATAACTTCTTGGTTCAATTGA 441 0.3787 MISGRCAACKNQRRKCPSDCIFSPYFPANDPQKFACVHKIYGGSNVGRMLQGIPTYLREQAANALYLEAKWRIDDPVYGSVGIISSLYEQVQNAEIELAKIQAQIAFYKLQTQHVEAEPNSEVLQSQSITMEQFESDNPTITSWFN* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1967 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 118 - -
Amo18g1967 146 Coils Coil 84 111 - -
Amo18g1967 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 118 - -
Amo18g1967 146 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Amo18g1967 146 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1967 Amo-Chr18 46347905 46349056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1967 1 115 AS2 family AT3G26620 58.974 7.37e-47 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo18g1967 LOB 1.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1967 - - lang:109328513 194.897