Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1966 ATGATTTCTGAAAGATGTGCTGCTTGCAAGAATCAAAGAAGAAAATGCCCTTCTGATTGCATTTTCTCTCCATGTTTTCCTGCCAATGATCCTCAAAAGTTTGCTTGTGTTCACAAAATCTACGGTGGCAGTAATGTTGGAAAGATGCTTCAGGGAATTCCAACCTATCTAAGAGAACAAGCTGCAAATGCATTGTATTTAGAAGCAAAATGGAGGATTCATGACCCTGTTTATGGGTGTGTTGGCATTATCTCTTCATTGTATGAACAAATTCAAAATGCAGAAATTGAACTAGCAAAAATTCAAACTCAGATTACTTTCTACAAGCTCCAAACCCAACGTGTTGAAGCTGAACCAAATTCGGAAGTTTTGCAAGCACAAAGCAGCAATATGGAGCAGTTTGAGTGGGACAATCCAACTATAGCTTCTTGGTTCAATTGA 441 0.3832 MISERCAACKNQRRKCPSDCIFSPCFPANDPQKFACVHKIYGGSNVGKMLQGIPTYLREQAANALYLEAKWRIHDPVYGCVGIISSLYEQIQNAEIELAKIQTQITFYKLQTQRVEAEPNSEVLQAQSSNMEQFEWDNPTIASWFN* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1966 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 118 - -
Amo18g1966 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 118 - -
Amo18g1966 146 Coils Coil 84 111 - -
Amo18g1966 146 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Amo18g1966 146 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1966 Amo-Chr18 46339202 46340388 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1966 1 105 AS2 family AT3G26660 61.905 3.05e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo18g1966 LOB 1.5e-35 No_clan