Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1946 TCTGCGTTGCCCAAGATTGCTGCTCTCTGCCCCAAGTCAACGCTCACTGCTGCCGCTTTTCCTGTCCACATCCCAGATCACCAGGATATTGTTTTTCCTCTCCTGATAAAACATTCAACATGCTTAATTTTTGTTGCCGGATCTCTCAACACTCTTCCAGCCAAAAGTACTCCACACGTGGGTGCTCTAGAATCTGAAATAGATCTGTTGTCACCTCACTGTGCAATCACTCACTCAATGTCTGCAACACCTCTCTCCAGTCACGAGCGTCACCTCTCCCCCTTAAAATATGAATGTAAAATAATAACTCCTCTCTTCTCTTCTGCACAGGTTTTCCTATCCGATTGGTGGCTTGCCAAGCCTTGCCTTCCACTCCAGGGCTTAGCGGTTGGTGGCATTGCTTATGGCCTGAGAGAGAGAATGTTCTTATCGACAGTGATTGCAAAGAGGCACGAGGCGAATGTCTTGGAGACCGAAGACGGAGTCACTCTTCACTTAAATAGTTTCATTAACAGCTCCCGCTCATCTCAGAATGGCTTCCCGCGCAAGGTATGCAAAGACTTCTTGTTGGGATTTCCAGACGATTGGCAAAAGTACACTGCTCATAGTTTTGGAGCTAAATGTGTCAATGGGGATACTGGATTTCATGAGCCAAATGCT 660 0.4682 SALPKIAALCPKSTLTAAAFPVHIPDHQDIVFPLLIKHSTCLIFVAGSLNTLPAKSTPHVGALESEIDLLSPHCAITHSMSATPLSSHERHLSPLKYECKIITPLFSSAQVFLSDWWLAKPCLPLQGLAVGGIAYGLRERMFLSTVIAKRHEANVLETEDGVTLHLNSFINSSRSSQNGFPRKVCKDFLLGFPDDWQKYTAHSFGAKCVNGDTGFHEPNA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1946 220 Pfam SANTA (SANT Associated) 111 199 IPR015216 -
Amo18g1946 220 PANTHER INTERACTING FAMILY PROTEIN, PUTATIVE-RELATED 89 210 - -
Amo18g1946 220 PANTHER KINETOCHORE-ASSOCIATED PROTEIN KNL-2 HOMOLOG 89 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1946 Amo-Chr18 45940313 45941793 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo18g1946 SANTA 4.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1946 - - aip:107614256 261.922